Query= MSMg01no196_n05.b1 MSMg01no196_n05.b1 CHROMAT_FILE:
MSMg01no196_n05.b1 PHD_FILE: MSMg01no196_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:30 2005
(373 letters)
>mm_chr7_129264643_129265415
Length = 773
Score = 582 bits (301), Expect = e-170
Identities = 347/375 (92%), Gaps = 23/375 (6%)
Strand = Plus / Minus
Query: 5 gaattccagaatagcttgggttacagagaaaccctgactctagaaacaaaagagagagag 64
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct: 748 gaattccagaatagcttgggctacagagaaaccctgactctagaaacaaaagaga-a-ag 691
Query: 65 agagagacaaag--------agagagacagagagtaggggtgtgggggtgaacacttgta 116
|||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 690 agagagacaaagagagagacagagagacagagagtaggggtgtgggggtgcacacttgta 631
Query: 117 atcccagcacttgggacttgggaggccagctggatctacctttcaagttctaaaccagcc 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 atcccagcacttgggacttgggaggccagctggatctacctttcaagttctaaaccagc- 572
Query: 177 tgctcaccaaaactggataccaacctgcaagtgtcaggtaggcaaggacaacctgcctgt 236
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ------------ctggataccaacctgcaagtgtcaggtaggcaaggacaacctgcctgt 524
Query: 237 gacaatgactctggcccccaagcaacatctctaccaagcaacatctctacctattgagtc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gacaatgactctggcccccaagcaacatctctaccaagcaacatctctacctattgagtc 464
Query: 297 attcattttctttaattgatgatttgttcaccaccatctttaatttccaaacaagtcagt 356
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 463 attcattttctttaattgatgagttgttcaccaggatctttaatttccaaacaagtcagt 404
Query: 357 tcttgtgggctaact 371
|||||||||||||||
Sbjct: 403 tcttgtgggctaact 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_n05.g1 MSMg01no196_n05.g1 CHROMAT_FILE:
MSMg01no196_n05.g1 PHD_FILE: MSMg01no196_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:30 2005
(595 letters)
>mm_chr7_129176229_129177223
Length = 995
Score = 1056 bits (546), Expect = 0.0
Identities = 570/578 (98%)
Strand = Plus / Plus
Query: 18 gatgcagagactacggggggatgctgcttacttgtttgctcagactgctttcttatagaa 77
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gatgcagagactacggggggatgctgcttacttgtttgctcagactgctttcttatagac 277
Query: 78 tccagggctaccagactggggatggcaccacccacaatgggctgttcccccaccccgccc 137
|||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 278 tccaggactaccagacaggggatggcaccacccacaatgggctgctcccccaccccgccc 337
Query: 138 cctgatcactgagaagatgccatgcagctggatctcgtggaggcatttcctcaactgagg 197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 actgatcactgagaagatgccatgcagctggatctcgtggaggcatttcctcaactgagg 397
Query: 198 atcctttctgtgatgactccagcttgtgtcaagttgacacacaaaaccagccagaacact 257
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atcctttctgtgatgactctagcttgtgtcaagttgacacacaaaaccagccagaacact 457
Query: 258 accttataccaagtttctttttagatacatgtccacctgattctgtttctctaagaactc 317
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 458 accttataccaagtttctttttagatacatgtccacctgattctgtttctctgagaactc 517
Query: 318 taatacgggccctcctaggccacgatgagaaaactcagttgtgtctcaccgaacctatct 377
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 518 taatacgggccctcctaggccacgatgagaaaactcagttgtgtctcaccaaacctatct 577
Query: 378 catgcatgtccaattagtaccctggagctgtgctctaatctctccacagcttgctgccaa 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 catgcatgtccaattagtaccctggagctgtgctctaatctctccacagcttgctgccaa 637
Query: 438 ggataaccttcccaaagcaaaactgatcatgtcatttctctgctttaaacatgtcaaggc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ggataaccttcccaaagcaaaactgatcatgtcatttctctgctttaaacatgtcaaggc 697
Query: 498 ttctcacctaccccagaactcacccacatccttgtcttcactaaaccaacccgtcttagt 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ttctcacctaccccagaactcacccacatccttgtcttcactaaaccaacccgtcttagt 757
Query: 558 tcaggagcagacccagctgagcagaccctattccatct 595
||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tcaggagcagacccagctgagcagaccctattccatct 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
