BAC Information

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BAC

Clone NameMSMg01-197B13
Chromosome7 (Build37)
Map Location 118,819,759 - 118,849,245
singlet/doubletdoublet
Overlap geneGalntl4
Upstream geneB430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658
Downstream geneLOC668399, LOC100042678, Usp47, Dkk3, Mical2, Micalcl, Parva, LOC627808, Tead1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197B13.T7 (MSMg01no197_b13.b1)MSMg01-197B13.TJ (MSMg01no197_b13.g1)
ACCAG384963AG384964
length707734
length of high quality
(start - end)		278 (430 - 707)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no197_b13.b1 PHD_FILE: MSMg01no197_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:51 2005CHROMAT_FILE: MSMg01no197_b13.g1 PHD_FILE: MSMg01no197_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,819,759 - 118,820,036)(118,848,963 - 118,849,245)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCGTGAACTCTTTCCTCCATGTGAAGATATAATGAAGAGGTGGACA
GTCTGTCCCCACAAGACCCCACCCACGCCAGCATGCTGATTCTGGACTTG
TAGCCTTTAGGTGTACAGGAAACAAATACCTACTGTTTGAAGCCATGTGG
TTCTTGGCATTCTGTACAAACAGCCTAAGAAGATACTGTGTGCACGCTCA
TTTGCTTTTCTAGTTGCTGTCACAAAACACCTGGCAATAGCAACTTAAGG
GAGGAAGGGTTTCTGTGAGTGCGAATGTGAGAGAATTGGATCCTGTAAAG
TGCATCTTTTTGTTTGACCCCCCTCCCTACACTGCCTCTGCAACCAGGAA
GCTGGGGACAAACAGAAAGTGAAACCTGAGCACTTAACCTCAAGGTGCAC
CCCAGGGACTCCCTTCTTCCAGAAGGGCCCAGCTCCTAAGTATTCTGCAA
CTGTCCCAGAATAACTGAGCCCCAAGTATTCAAAATGTGGGACTAGGGCA
ATATTCCACACCCAAAGCACAATAGTGTGTATACACATGCATGTTCACAC
ATATGTCCACATGTGTATACATATGTAGACATTGATATATTTTCATATTA
TTCCCATGCATTTTCTGGTTCTAGTGGGGGCGGTTACCTGAAGCCCACAC
AGAAATC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATGACCCGTGCACTATCAAAAA
GTTGGAAGCTCATACAGTCATGAGTTGGAGACATCTGTACATTACTCTGA
TCAATAGGTTGCACAAAGTATCCATGGTCCATCAGGACATGGACATGATT
AGCAAGGAAGAAGTGCATGCATGCAGACTGTCCTGCCATCAGCATCAAGA
TCTACGGGGTGAGTTTACAAAGGTAACGGTGGACCGCAGACTTTTAGCAT
ACAGAAATGGAGTTGGTCAAGGTGGACAGGTAGTCAATGGCTCATGTGCT
CACCCCTGTGTTTTTGACGCTCACTTCCATTCAAAATGCATTTGGATGTC
CAAAGTTCTCGTGGATGGAGGATGTGATGTGATTACACACTAGGTGGGAC
ACCTCTGCAGGGCCTCCTCCAGGCCAGTTCAGAAGATCTGAATGTTGAAG
TAGAGCTTTAAATGTGGAGACCCAGAAGGTCCAGAACCCAGCAGGTCTGG
GTACCACAGCAGTGGAGGCTGTGGATAGAGTCTGGATCTGGTCACATGCG
ATCCTGAGGCAGGGTCACTGAGACAGGTAAGATGCGCTAGATGGAGAAGG
TTTGCCCTTGTGTTTAGTACCTTCCCAGTGGCATTGGAGAGATGCTTTCT
GTGACCTACAGTGACAGGTCTCCCTCCACTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_b13.b1 MSMg01no197_b13.b1 CHROMAT_FILE:
MSMg01no197_b13.b1 PHD_FILE: MSMg01no197_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:51 2005
         (278 letters)



>mm_chr7_118819559_118820236
          Length = 678

 Score =  507 bits (262), Expect = e-148
 Identities = 274/278 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacttaacctcaaggtgcaccccagggactcccttcttccagaagggcccagctcctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacttaacctcaaggtgcaccccagggactcccttcttccagaagggcccagctcctaa 260

                                                                       
Query: 61  gtattctgcaactgtcccagaataactgagccccaagtattcaaaatgtgggactagggc 120
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gtattctgcaactatcccagaataactgaggcccaagtattcaaaatgtgggactagggc 320

                                                                       
Query: 121 aatattccacacccaaagcacaatagtgtgtatacacatgcatgttcacacatatgtcca 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 aatattccacacccaaagcacaatagtgtgtatatacatgcatgttcacacatatgtcca 380

                                                                       
Query: 181 catgtgtatacatatgtagacattgatatattttcatattattcccatgcattttctggt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 catgtgtatacatatgtagacattgatatattttcatattattcccatgcgttttctggt 440

                                                 
Query: 241 tctagtgggggcggttacctgaagcccacacagaaatc 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctagtgggggcggttacctgaagcccacacagaaatc 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no197_b13.g1 MSMg01no197_b13.g1 CHROMAT_FILE:
MSMg01no197_b13.g1 PHD_FILE: MSMg01no197_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:51 2005
         (283 letters)



>mm_chr7_118848763_118849445
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatgacccgtgcactatcaaaaagttggaagctcatacagtcatgagttggagacatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctatgacccgtgcactatcaaaaagttggaagctcatacagtcatgagttggagacatct 424

                                                                       
Query: 61  gtacattactctgatcaataggttgcacaaagtatccatggtccatcaggacatggacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtacattactctgatcaataggttgcacaaagtatccatggtccatcaggacatggacat 364

                                                                       
Query: 121 gattagcaaggaagaagtgcatgcatgcagactgtcctgccatcagcatcaagatctacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gattagcaaggaagaagtgcatgcatgcagactgtcctgccatcagcatcaagatctacg 304

                                                                       
Query: 181 gggtgagtttacaaaggtaacggtggaccgcagacttttagcatacagaaatggagttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gggtgagtttacaaaggtaacggtggaccgcagacttttagcatacagaaatggagttgg 244

                                                      
Query: 241 tcaaggtggacaggtagtcaatggctcatgtgctcacccctgt 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tcaaggtggacaggtagtcaatggctcatgtgctcacccctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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