BAC Information

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BAC

Clone NameMSMg01-197H20
Chromosome7 (Build37)
Map Location 130,284,485 - 130,284,678
singlet/doubletsinglet
Overlap geneTnrc6a
Upstream geneDctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981
Downstream geneSlc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482, EG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197H20.T7 (MSMg01no197_h20.b1)MSMg01-197H20.TJ (MSMg01no197_h20.g1)
ACCAG385197AG385198
length752754
length of high quality
(start - end)
311 (46 - 356)194 (124 - 317)
definitionCHROMAT_FILE: MSMg01no197_h20.b1 PHD_FILE: MSMg01no197_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:24 2005CHROMAT_FILE: MSMg01no197_h20.g1 PHD_FILE: MSMg01no197_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGTTAGACTTAAGGAATTTTGGGAAGTTAGGGTGGTTGATGGA
AGGTTTAAAGTCAGAATCAACAGTAGGATGTCCCTTTCTCATGGAAGGGC
AAGAACTGCACAGAGAGCGTCCGTTCATGCGTTACAAGCATGCAATTGTA
GTAGCGAGAAAAATAGGCTGGGGACAAGTTAATGATCAAAGAAAGCATTC
ACTCCAGGTTGGGCCTGAGTTTCTTGGTCTTGTGATCTAGGGATATAGTA
ACAGGTTTTCGGTGTGCACCATTAAATAAGAAGGTTGTAAATAAGGCGTA
AACAATTCTTTTATGAATACCCCCCCACCACAACAGTTAGCCACTCTAGA
CGTCAAAAATAAGACCCCCCCCATATGACCTGTTCCTTAGTAAATACAGA
TTGTCTTATCCAGGTATGGCAAGAAATTTGTTACTATAGCCTTGGCCTAT
TTAAACTTTGTTATCTATGACAAGAGAATTACTGCTTTATGCTTACTGTG
AGCGAGTCGAAAGACAGATAACATTTGTTCAATTAGATCTATTTTTCTCA
TAATCCTTAATAATTCCTGTTGCTATTTTCCCTTTGTGAAACGTTTTTTC
CCCCGCCCTTTCATATAATTTCTTTCCCGCCCTTCCGTTTTTAATCACTT
GCACCTGCTTGATTTTCACTTACTCTCCTTTTCCTCACCTTACACTTCCA
TG
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGTTGTCAGGGTTGGTGGCAGGCAG
CTTATACACTGACTCTTATTCCTGTCCCCTGAAAGTTTATTTATGATCCC
CATTGCTGCTTAGCAGCATACACATAAAATAAATACTAAAAAAAAATTAC
ATGGAGAATCTAGCTTATATACAACATCTACATTTTGAGTATAGGTAATA
GACATAACAAATGTTTAGAACTAGGTGACTCCAGAGCATTTCTGTCTTCT
ACAAAGTTTCCTCTGGGCACTCAAAGGCTTTCAGTTGTACAGACGATAAG
TAAAAATATTTTTTTCTCATCGGCCACCCCCAGAAGGGGAGCCCATCCGG
TTCCTGTTAAGCCCCCCGTAAATTTATAGAACTATAGCTTTGAAATATCT
TGCCACTGGCCTTGAAGAGAACAGTAGCTAAAATTTTGGTATATGTAAAA
ACCTATAAAAAGATGGGTGGGTGAGCCTAGAAAAAAGATGGATGAGTGGA
TGAATAGAGTGAGTGAGTCTATGTGATATATGGTTACTGACTACTTTCAC
TATACCACTTTTTCCCCATTTTTCTTTTCTTTCTTTAAATATTTTACTTA
CTCTTTTTTTTTTTTTTTTTCCCTTACTTTTCTTACTTGTCTCTATCTCC
CTTTTCATTTTCCATGTGTTTTTTCATTTATTATCCCATTAATCCTTCTA
TTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_h20.g1 MSMg01no197_h20.g1 CHROMAT_FILE:
MSMg01no197_h20.g1 PHD_FILE: MSMg01no197_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:24 2005
         (194 letters)



>mm_chr7_130284285_130284878
          Length = 594

 Score =  352 bits (182), Expect = e-102
 Identities = 191/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcccctgaaagtttatttatgatccccattgctgcttagcagcatacacataaaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcccctgaaagtttatttatgatccccattgctgcttagcagcatacacataaaataaa 260

                                                                       
Query: 61  tactaaaaaaaaattacatggagaatctagcttatatacaacatctacattttgagtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tactaaaaaaaaattacatggagaatctagcttatatacaacatctacattttgagtatg 320

                                                                       
Query: 121 ggtaatagacataacaaatgtttagaactaggtgactccagagcatttctgtcttctaca 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtaatagacataacaaatgtatagaactaggtgactccagagcatttctgtcttctaca 380

                         
Query: 181 aagtttcctctggg 194
           ||||| ||||||||
Sbjct: 381 aagttccctctggg 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)