BAC Information

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BAC

Clone NameMSMg01-199G23
Chromosome7 (Build37)
Map Location 34,695,387 - 34,695,705
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668411, LOC100043850, LOC100043386, LOC668416, EG668526, LOC100043388, LOC270234, EG668419, EG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803
Downstream geneAbpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199G23.T7 (MSMg01no199_g23.b1)MSMg01-199G23.TJ (MSMg01no199_g23.g1)
ACCAG386376AG386377
length713787
length of high quality
(start - end)
320 (50 - 369)407 (78 - 484)
definitionCHROMAT_FILE: MSMg01no199_g23.b1 PHD_FILE: MSMg01no199_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:59 2005CHROMAT_FILE: MSMg01no199_g23.g1 PHD_FILE: MSMg01no199_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAATATACCATCACTCTAAGAATGAGATTGTTGTTCATGTGG
TTTGTGGACCAACTCTTAGACCACAAAAAAAAAGCATTGAGCCATATCTC
TAATCCTTACCTTGATTATTTCACATGAGCACCTGCAAGACAGTTTTTGT
ACTATTATTAGTATGAAGGACCTTGGTGGTCACCAGCCCCCTTTTCTGCT
GCTTTCTGCTTTTACTAATCTGAGTTTGTTCTTGATTGTTTTTTTTTCTT
TTTTCTTTTTTCCCATTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCAT
ATAACGTTTGCCTGACCAATGTTCCTCTCCCTCCACCGATGGCCGACTAG
GTCATCTTTTGATACATATGCACCCAGAGACAAGAGATCTGGGGTACTGG
TTAGTTCATAATGTTGTTCCTCCGATAGGGTTGCAGATCTCTTTAGCTCC
TTGGATACTTTCTCTAGCTCCTCCATTGGTGGCCCTGTGATCCATCCAAT
AGTTGACTGTGAGCATCCACTTCTGTGTTTGCTATTTCCCGTCCTAGCCT
CACCTTGCACACCCATATTACCGCCCTTGCAACAAAGGTTTGCTAGTGTA
CGCCATGCTGGTATCCCTTTGCTTCCTAGTTATTATAAGCCCTGGCTCTC
CTCCATATGCCTN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACCATGAAGGGGACACTTCT
TCTGCTGGCCTTGCTGGTGATTGGAGAGCTGGGCTTCCAGACAAGTGAGA
ATGTGACCCTTCCTTACCCCATCTCAGTCCCATGTAGATCTCTAAGTGGG
GTTCTGAGACAGACCTAGGGGTTCCTGGTAGGCCACTGGCAGTGGAACTG
TAAGGAACTGCAGAAGAGGGTTGATGCTTTCAGCTCTGGGTTACAACAGT
TGCGGTGGGTGACATGGAGAGACAGAGGTGTGCTGGTGATGAGTGTCATG
ATGTAGAAGCACAGTGTCATGATGTAGAAGCAGACACAATGTGCGACTTC
CTGAAGTTCAGATATGCAGGCCCGCCCACTCATGTGAAGTGTGTGTCTCA
AGGAAACCATGTTTTATCAGAGAGGCTACTGCCTTTGTGAGGGTAGGACT
ATGGTAAAGGTCACTTAAGGTACCTATTGATTGTTTCTTGGAATCCTGAG
CTTCTGTTTTTGCCCTTCTTGTGTTCTTACATTGACGTTTTCGCTGTCGC
GCTTTGCTTTTCATTTCTTTTCCTTCCTCCTCTCCTTTACCCCTTCTTCC
CCCCACTTTATTTTTCCCCCCCCCGTTAATTTGCCCGCGTATAGAGAATA
AATTTCTCCGCTTCTGTATTTAGCGCCCTTGTCTCCTCCCCTTTTTTACA
ATTTTTTTTACTCCCCTCTTTATTTGTTTTATCCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_g23.b1 MSMg01no199_g23.b1 CHROMAT_FILE:
MSMg01no199_g23.b1 PHD_FILE: MSMg01no199_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:59 2005
         (320 letters)



>mm_chr7_34695250_34695965
          Length = 716

 Score =  586 bits (303), Expect = e-172
 Identities = 314/321 (97%), Gaps = 7/321 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatataccatcactctaagaatgagattgttgttcatgtggtttgtggaccaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaattcaatataccatcactctaagaatgagattgttgttcatgtggtttgtggaccaac 397

                                                                       
Query: 65  tcttagaccacaaaaaaaaagcattgagccatatctctaatccttaccttgattatttca 124
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tcttagaccac--aaaaaaagcattgagccatatctctaatccttaccttgattatttca 339

                                                                       
Query: 125 catgagcacctgcaagacagtttttgtactattattagtatgaaggaccttggtggtcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 catgagcacctgcaagacagtttttgtactattattagtatgaaggaccttggtggtcac 279

                                                                       
Query: 185 cagcccccttttctgctgctttctgcttttactaatctgagtttgttcttgattgttttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cagcccccttttctgctgctttctgcttttactaatctgagtttgttcttgattgttttt 219

                                                                       
Query: 245 tttt-----cttttttcttttttcccattttttggccctggcattcccctgtactggggc 299
           ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tttttttttcttttttcttttttcccattttttggccctggcattcccctgtactggggc 159

                                
Query: 300 atataacgtttgcctgaccaa 320
           |||||||||||||||||||||
Sbjct: 158 atataacgtttgcctgaccaa 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 716
Length adjustment: 9
Effective length of query: 311
Effective length of database: 707
Effective search space:   219877
Effective search space used:   219877
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)