BAC Information

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BAC

Clone NameMSMg01-199L23
Chromosome7 (Build37)
Map Location 151,890,867 - 151,926,057
singlet/doubletdoublet
Overlap geneTmem16a
Upstream geneOsbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498, Shank2, Cttn, Ppfia1, Fadd
Downstream geneLOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199L23.T7 (MSMg01no199_l23.b1)MSMg01-199L23.TJ (MSMg01no199_l23.g1)
ACCAG386567AG386568
length734739
length of high quality
(start - end)		689 (46 - 734)654 (86 - 739)
definitionCHROMAT_FILE: MSMg01no199_l23.b1 PHD_FILE: MSMg01no199_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:25 2005CHROMAT_FILE: MSMg01no199_l23.g1 PHD_FILE: MSMg01no199_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,925,373 - 151,926,057)(151,890,867 - 151,891,520)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGAATTTTCTGTGTATTTATACAACGGAGCTATTGCTGTGCACC
ACGTTAGTGATCAGACCCTTCCAAGAAAAACCAGTTTTATCTTGACTCCC
ACACACTGGTCAGATGGATCATGACTGACTGTGGGAGGGAACCAGGGCAG
CCCCTTGCTCCACGTGGTCTCCTTGGCAGACACCAGGTACAGGGAACACT
CTGGGGGGGCTTCTTAAGACTTCCAGGGAGAGGAAAAGTCCCAACCTGGC
ACTAAATGTCTCAAGCCAGACTCAAGGAGGCAAGGTAGAAACAACAGGGC
TCACTTGGCTGGGGATGGTTCTCTGTGGTTCACCCACTAGAGTCTTTTCC
ATTCAGAGCAGTGTACAGGGGGATCAAGTGCCCCCTTCCCTCCCACCCAC
TTCTGAGGTTCGGCAGGGGGAGGAGCCATGGCTCATGCCCCTAGCTGGGA
GCCCCTTCCCTGTGAGAGTGCAGTGGGTGCCACACAGTGTCTGGGACCTG
TCTCCATCAAGGTCCAACCAAAGCATTAGTGGAGAGTTGTCTTGGCAGGT
GACCCGGGGTCCTTAGCACTCTCTGTTGTCAACAAATGACTCTCCCCACC
CCAAAAGTTGAGACTGGACTCCCATCTGCCTACTCCCCTCCCCCAAACCA
GCAGATTAACGTTTTGTTTATGGTCCTTCTGTCC

TTTTTACNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGACTCTGAGCT
TCGTGGTGTCCTGATGTGGTGACCATGGGAAACCTGCATAGTGAACCCCA
GCCTCTTACAGACCTGGACTAGGACACTTGCCCCCTCAGGGTCCTCACTA
AGCCACTGAGCTGGAGGTGGGGTGAGGTATACCTGGGAGATTTGGTGGGG
AGATTTCTCTGGAAAGCAGAGAGAAAAAGCTATCCATTGTCAATTCAGCA
AATATTTACCAAGCAGATACATTTCCAGCAGTTTCCAGCCACTGCGGCTG
TGGTTCCTGGGCTCAGCACCTGCATCTCCAGCTCCGTCCAACATTGGGGG
AGATGGCTGATGTTTCAGACAGTCTGGGGTTCAGGATGATGGTCTCAGCT
CCCTGCTAACTCTCAGGATCCCACTTCTGACCTCTGTCACATGTGACCTC
TGTTTGTCTGCACAAACAGCATCTTAAACCTCACTCAGGGTGTGCAGAGA
AGACCAGCTCAGCTTGTGATTACCACAGAAACACACGCCAGGAAGGTAAG
CAGAATCAATGTGAACCGGCTCCTCTCGCTTTAGAGATGAATAATTGATG
TTGGGCTGGACCCACTCTGCATTGCACAGGGCAGGAGAAAGGCCAGTTCT
CCCTCCTTACACCATGGCATCCCAACTGAGCTCAGAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_l23.b1 MSMg01no199_l23.b1 CHROMAT_FILE:
MSMg01no199_l23.b1 PHD_FILE: MSMg01no199_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:25 2005
         (689 letters)



>mm_chr7_151925169_151926257
          Length = 1089

 Score = 1294 bits (669), Expect = 0.0
 Identities = 681/685 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagaattttctgtgtatttatacaacggagctattgctgtgcaccacgttagtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 gaattctagaattttctgtgtatttatacaacggagctattgctgtgcaccacgttagtg 830

                                                                       
Query: 65  atcagacccttccaagaaaaaccagttttatcttgactcccacacactggtcagatggat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 atcagacccttccaagaaaaaccagttttatcttgactcccacacactggtcagatggat 770

                                                                       
Query: 125 catgactgactgtgggagggaaccagggcagccccttgctccacgtggtctccttggcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 catgactgactgtgggagggaaccagggcagccccttgctccacgtggtctccttggcag 710

                                                                       
Query: 185 acaccaggtacagggaacactctgggggggcttcttaagacttccagggagaggaaaagt 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 acaccaggtacagggcacactctgggggggcttcttaagacttccagggagaggaaaagt 650

                                                                       
Query: 245 cccaacctggcactaaatgtctcaagccagactcaaggaggcaaggtagaaacaacaggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 cccaacctggcactaaatgtctcaagccagactcaaggaggcaaggtagaaacaacaggg 590

                                                                       
Query: 305 ctcacttggctggggatggttctctgtggttcacccactagagtcttttccattcagagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctcacttggctggggatggttctctgtggttcacccactagagtcttttccattcagagc 530

                                                                       
Query: 365 agtgtacagggggatcaagtgcccccttccctcccacccacttctgaggttcggcagggg 424
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 529 agtgtacagggggatcaagtgcccccttccctcccacccacccctgaggttcggcagggg 470

                                                                       
Query: 425 gaggagccatggctcatgcccctagctgggagccccttccctgtgagagtgcagtgggtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaggagccatggctcatgcccctagctgggagccccttccctgtgagagtgcagtgggtg 410

                                                                       
Query: 485 ccacacagtgtctgggacctgtctccatcaaggtccaaccaaagcattagtggagagttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ccacacagtgtctgggacctgtctccatcaaggtccaaccaaagcattagtggagagttg 350

                                                                       
Query: 545 tcttggcaggtgacccggggtccttagcactctctgttgtcaacaaatgactctccccac 604
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 acttggcaggtgacccggggtccttagcactctctgttgtcaacaaatgactctccccac 290

                                                                       
Query: 605 cccaaaagttgagactggactcccatctgcctactcccctcccccaaaccagcagattaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cccaaaagttgagactggactcccatctgcctactcccctcccccaaaccagcagattaa 230

                                    
Query: 665 cgttttgtttatggtccttctgtcc 689
           |||||||||||||||||||||||||
Sbjct: 229 cgttttgtttatggtccttctgtcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no199_l23.g1 MSMg01no199_l23.g1 CHROMAT_FILE:
MSMg01no199_l23.g1 PHD_FILE: MSMg01no199_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:25 2005
         (654 letters)



>mm_chr7_151890667_151891720
          Length = 1054

 Score = 1241 bits (642), Expect = 0.0
 Identities = 651/654 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgactctgagcttcgtggtgtcctgatgtggtgaccatgggaaacctgcatagtgaa 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 ttctgactctgagcttcgtggtgtcctgatgtggtgaccgtgggaaacctgcatagtgaa 260

                                                                       
Query: 61  ccccagcctcttacagacctggactaggacacttgccccctcagggtcctcactaagcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccagcctcttacagacctggactaggacacttgccccctcagggtcctcactaagcca 320

                                                                       
Query: 121 ctgagctggaggtggggtgaggtatacctgggagatttggtggggagatttctctggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagctggaggtggggtgaggtatacctgggagatttggtggggagatttctctggaaa 380

                                                                       
Query: 181 gcagagagaaaaagctatccattgtcaattcagcaaatatttaccaagcagatacatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagagagaaaaagctatccattgtcaattcagcaaatatttaccaagcagatacatttc 440

                                                                       
Query: 241 cagcagtttccagccactgcggctgtggttcctgggctcagcacctgcatctccagctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 cagcagtttccagccactgcggctgtggttcctgggctcagcacctgcatccccagctcc 500

                                                                       
Query: 301 gtccaacattgggggagatggctgatgtttcagacagtctggggttcaggatgatggtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccaacattgggggagatggctgatgtttcagacagtctggggttcaggatgatggtct 560

                                                                       
Query: 361 cagctccctgctaactctcaggatcccacttctgacctctgtcacatgtgacctctgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagctccctgctaactctcaggatcccacttctgacctctgtcacatgtgacctctgttt 620

                                                                       
Query: 421 gtctgcacaaacagcatcttaaacctcactcagggtgtgcagagaagaccagctcagctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctgcacaaacagcatcttaaacctcactcagggtgtgcagagaagaccagctcagctt 680

                                                                       
Query: 481 gtgattaccacagaaacacacgccaggaaggtaagcagaatcaatgtgaaccggctcctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgattaccacagaaacacacgccaggaaggtaagcagaatcaatgtgaaccggctcctc 740

                                                                       
Query: 541 tcgctttagagatgaataattgatgttgggctggacccactctgcattgcacagggcagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcgctttagagatgaataattgatgttgggctggacccactctgcattgcacagggcagg 800

                                                                 
Query: 601 agaaaggccagttctccctccttacaccatggcatcccaactgagctcagagac 654
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 801 agaaaggccagttctccctccttacaccatggcatcccaactgacctcagagac 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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