BAC Information

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BAC

Clone NameMSMg01-201C10
Chromosome7 (Build37)
Map Location 68,058,545 - 68,059,314
singlet/doubletsinglet
Overlap genenone
Upstream geneSnrpn, Snurf, EG664849, LOC100041201, LOC100041211, LOC664896
Downstream geneLOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201C10.T7 (MSMg01no201_c10.b1)MSMg01-201C10.TJ (MSMg01no201_c10.g1)
ACCAG386817AG386818
length1,2421,225
length of high quality
(start - end)		778 (92 - 869)369 (76 - 444)
definitionCHROMAT_FILE: MSMg01no201_c10.b1 PHD_FILE: MSMg01no201_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:05 2005CHROMAT_FILE: MSMg01no201_c10.g1 PHD_FILE: MSMg01no201_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAATATNNNNNNNNTACATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGTAATCAAATCATGTTCATTTACTTAGTGTTTAAAAC
AACCGATATGTATGTATGTGCCTATATATACATATATACATATATGCACA
CACCTACATACACACTAGGCTTAATGTAATCACAATTTATTGGTGGGGGA
AATCTGAAAAAGAACAGTCTAGAAAACCTTGATAATTTCTTGGTTTCTGC
CTCTGCCAACTATATCAAACTGATCCATCCAGGCACAGATCTCCTTGAGC
TGATCCCCATTGGTAAACTTCTACTGAAATTAGTTCCAAGATTTGAGTTG
TTAAGGTAGCCTATTTCCTCCTGTTAGTGGAGATACATATAACAACTCCT
GCCAAGAAAACATGAGATTTCCTGAAATTGTGCTTTATTTATGTAAATCT
ATTACAAAGAGAGTCTTTGCAAGTCTGTAAAAAGTAATAAATCATTTTGT
TCACTTCCCTATTTCCCTATTTCTTCACTTCTCTCACATTCTTTCCTTTA
TTTACAGCAACATACATTTACGGTGAGCCATGCAGACATCTTACTTTGAT
AGTTATTAAGAATATAGTAGTCGCAGTGCTATTTGTGTTCATAGAGTTTT
CTATACTGTATATCAATTGACCATTAGCTTTTATGTTAAATTCGTAACCT
ATCAGTTGCTCCATAAGAAGAAAAACTTGGACAGAAAAAAAATTATAGGT
GATAAAGGAAACACTAGATAATATGTGATGTATTGGAATGAGAAAAGTTT
TGTGATTGTCATCAGCAATTCAGACAGAGCTGAATAACTACATAAACAGG
GTTTTATTAAGTTTGTTGGGGTCTGAGGTCTCTGAATATTTCAGTGTTTC
AAGTTCAGAGCTTGTTCTTTTTTTCTATTAATGCCAGGGGCTTGATCCTA
CCATTAAAGCCAGTTAAAGTGTTCTGTATTGTCACCTGGTGGCTTAAAAA
AATCCAAACTCAGTCCTTGCCATTATTGTTCTCTTGTTTTTTTATGGTTT
TTAAATTTTTCCCACAGTTCTCTTTATAAAATTTCTTATGCTTTATTTCT
TTCTTTTTTAATATTTATTTTTATACATTCCTTCTTCTTTCATTTATTTT
TATATCATCGTCCCTCATTTCTACTTCTCTTTTTTTTCATTAATTGTATT
TTATTTATCATTTCCTTTATTTTTTACATTTTCTTTCACTTC

NNNNTTTGGTGCGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTCTGTTTATTTCTATACCCCCATTTTTTGA
TTGCGTTGCTTGATTTTTGGTGGTTAGCTTCTTGAGCCCCTTATATATTT
TGGATATTACCTCTCTAAAGGATGTGGGATTAGTGAAGAATTTTTTCCCA
ATCTGTAAGATTTTCAGTTTGTCCTATTGATAATATCCTTTGCCTTACAT
AAGATTTCCAGTCTTATTAGGTCCCATTGATCAATTCTTGATATTATAAT
CTGATATATTTTCCTTGTGTTTAGGGACCCCCACACAAACCCCACATTAT
TGAGTTGAAGGCACTTCCCTACTTTCTATTATATTGTATTTAGGGTATTT
GGTTTTATTTTGCGGNCCTTAATCCACTTGAACAGGAGCTTTGTTCCAGG
TGATAAACGCGCATCTTTTATTTTTTTATTCTTAACACAGATTTGACAAT
ATATCTCCATTTATTAATAATGCTTTTCTTTTATCCTTTGGTTATTTTTG
ACTTCTTTGTCTTAGATCTTCTGTTCTTTATTTTGTTTTCAGTTTTTTTG
TTTCTCCTTTCTTTTTCTCTTATCTCTCCTGTCTATCCTTTGTTTTTTTT
TTCTTTTTTTTTTTAATTTTTTTTGTTTATTTTTTTCTCTTTTTTTTTTT
TTTTTTTATTTCTTTTATTTTTCTTTTTCTATTTTTTCTTTCTTCTTATT
TTACTTTTTTCTTTCTCTTTGTTTTTTCTTTTTCTTTTTTTTTCTTTTTT
CTTTCTTTTTCTTTTTTCTCTTTTTTTCTTTTGTCTTACTTCTTTTCTTT
ATTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTCTATTCTTTTTTTTCTC
TTCTTTCTCTTTTTTCTGTCTCCATCTTTCGGTATTTTCTCCTCTTTTTT
TTTTTTTCTCTTTCTTTCTTCTTTTCTTTTCTCTTCTTTTTTTTCTCTTT
CTTTTTTATTTCTCTTTTATTTTTATTTTTTCCTTTGGGCTCTATTTCTT
TTTATCTTTCTTTACACTTTTTCTTTTTCTTATCTATCTTTTCCTCTATT
TTCTTCTTTTACTTTCTTTTACTTTTTTCTTCCTTTTTTTTTTCTTTTAT
CTTTTCTTCTTTTATCTGTTCCTTTTTCTTTCTTTCTTATTCCTTCTTTT
TCTTCTTCTCTTTCTCACCTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_c10.b1 MSMg01no201_c10.b1 CHROMAT_FILE:
MSMg01no201_c10.b1 PHD_FILE: MSMg01no201_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:05 2005
         (778 letters)



>mm_chr7_68058335_68059514
          Length = 1180

 Score = 1402 bits (725), Expect = 0.0
 Identities = 762/783 (97%), Gaps = 18/783 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttaaaacaaccgatatgtatgtatgtgcctatatatacatatatacatatatgcacac 60
           |||||||||||||||||||||||||||||      |||  ||||||  || |||||||||
Sbjct: 211 gtttaaaacaaccgatatgtatgtatgtg------tat--atatat--atgtatgcacac 260

                                                                       
Query: 61  acctacatacacactaggcttaatgtaatcacaatttattggtgggggaaatctgaaaaa 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatacatacacactaggcttaatgtaatcacaatttattggtgggggaaatctgaaaaa 320

                                                                       
Query: 121 gaacagtctagaaaaccttgataatttcttggtttctgcctctgccaactatatcaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacagtctagaaaaccttgataatttcttggtttctgcctctgccaactatatcaaact 380

                                                                       
Query: 181 gatccatccaggcacagatctccttgagctgatccccattggtaaacttctactgaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatccatccaggcacagatctccttgagctgatccccattggtaaacttctactgaaatt 440

                                                                       
Query: 241 agttccaagatttgagttgttaaggtagcctatttcctcctgttagtggagatacatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttccaagatttgagttgttaaggtagcctatttcctcctgttagtggagatacatata 500

                                                                       
Query: 301 acaactcctgccaagaaaacatgagatttcctgaaattgtgctttatttatgtaaatcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaactcctgccaagaaaacatgagatttcctgaaattgtgctttatttatgtaaatcta 560

                                                                       
Query: 361 ttacaaagagagtctttgcaagtctgtaaaaagtaataaatcattttgttcacttcccta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacaaagagagtctttgcaagtctgtaaaaagtaataaatcattttgttcacttcccta 620

                                                                       
Query: 421 tttccctatttcttcacttctctcacattctttcctttatttacagcaacatacatttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttccctatttcttcacttctctcacattctttcctttatttacagcaacatacatttac 680

                                                                       
Query: 481 ggtgagccatgcagacatctta-----ctttgatagttattaagaatatagtagtcgcag 535
           ||||||||||||||||||||||     ||||||||||| |||||||||||||||||||||
Sbjct: 681 ggtgagccatgcagacatcttatcttactttgatagtttttaagaatatagtagtcgcag 740

                                                                       
Query: 536 tgctatttgtgttcatagagttttctatactgtatatcaattgaccattagcttttatgt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgctatttgtgttcatagagttttctatactgtatatcaattgaccattagcttttatgt 800

                                                                       
Query: 596 taaattcgtaacctatcagttgctccataagaagaaaaacttggacagaaaaaaaattat 655
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 801 taaattcgtaacctatcagttgctccataagaa---aaacttggacagaaaaaaaattat 857

                                                                       
Query: 656 aggtgataaaggaaacactagataatatgtgatgtattggaatgagaaaagttttgtgat 715
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aggtgataaaggaaacactagataatatgtgatgtattggaatgagaaaagttttgtgat 917

                                                                       
Query: 716 tgtcatcagcaattcagacagagctgaataactacataaacagggttttattaagtttgt 775
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 tgtcatcagcaattcagacagagctgaataactacataaacagggttttattaagtttgt 977

              
Query: 776 tgg 778
           |||
Sbjct: 978 tgg 980


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 778
Length of database: 1180
Length adjustment: 10
Effective length of query: 768
Effective length of database: 1170
Effective search space:   898560
Effective search space used:   898560
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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