BAC Information

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BAC

Clone NameMSMg01-202G14
Chromosome7 (Build37)
Map Location 123,206,540 - 123,206,848
singlet/doubletsinglet
Overlap geneEG668479
Upstream geneLOC668472, Sox6, LOC100042779, 1110006G14Rik
Downstream geneLOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202G14.T7 (MSMg01no202_g14.b1)MSMg01-202G14.TJ (MSMg01no202_g14.g1)
ACCAG387578AG387579
length715712
length of high quality
(start - end)		314 (46 - 359)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no202_g14.b1 PHD_FILE: MSMg01no202_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:13 2005CHROMAT_FILE: MSMg01no202_g14.g1 PHD_FILE: MSMg01no202_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTTGTACTACAAAGAACATTGAAATCATAGCATCCTCAGAAAAA
TAGATATTACTGAAAATCATGAAGTAATAAGCCAAACTCATAAAACAAAT
ATCACATTTCCTCTTATACATATAACCTCGACTAAATTATGGGTGTGTGT
GTGCATATCTATGACATGAAGGTAGAAAGTGTCATTGAGAGGAGAAGGAG
AATTCTAGGGAGAGTGGAAAGAAAGCAGGAAAAAGCAGTGGAGTATGTCA
TGAAAGCAGGAGGGAGTATTTGGGAAAGGGAAGGGGACCAGCGAGGATGG
AGCAGGGTTTTATTACTCCCCCCCCCCACCAACAAGGCATGATATGCACA
ACAATGACTCAAACAAACCCACTTCATTGATTGCTAAACTAAGAGTTAGC
TCAAAAAAATAACTTAAGCTGGAAACAACCTGAATGCTTTTCAGCAGCAT
ATGGGACCTCTGTACAATGGAATGCAACTCAATAGAGATAGGACCCAAGC
CACACATACACTCAAGGACAAGGCTAGAGATCAAAGCCCTGTGTCCAATA
AAATCACTTCTCTTATATGACTGTCCACAAGAGGTATGATTTAATGTCAG
GGATATTATCTTACTCTAGCCTTGAGCACGCAAAAGGCTTGGGGAAAGAA
ATTTATTATCTGATA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTATGAGGACCAGGTTGGCCTCAAA
CCAGGCTGAGGGACTTCCTCAGAAGGGAGGGACTGAAGAATTGCCTCTGC
CTCCCAAGTGTCAGAATTAAAAACACATGCTTTGAAAATAAGTTAAAATA
TTTTAAAATATAAAAATTAAAAGCATGTGTGGTGGCACATACCTTTAGTC
CCATCACTCAGGAGGCTGAGGCAGGAGGCTTATGAGTTGGAGACCAGTCT
GGGCTCACTAGCAAAATAAATCAAGAAATCATGAAATACATTTATAATTT
CAATCTTTCATACTTTGCACCCTGCACACAAGTAATTCTCTTGTAAGCTA
GGCTAACACAGAACATATTGATTGACATTCTTTCTGAAATTTAAGAGTAT
AGAGATGAACATGCTTTTGATGGTTTTTATTTCAGTATTTCTGAGGAGAA
AAGACCACAAATGTTTTGCTGTAATAACTTTCCATTTCGAAATGAAGCAT
GCTAAACTGACATCCTAAATCCCCAAGCATAGAATTAGAGTATCTTAGTT
TTATAGAAGACACACACTTCATACAGGCTCTTAGAAATTGCCCCTGACAG
CTTAATGAATTAATTCCTTTATTGTTGGTGCTGCTAAACTGTTGTTTTGG
TTTTTTGTTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_g14.b1 MSMg01no202_g14.b1 CHROMAT_FILE:
MSMg01no202_g14.b1 PHD_FILE: MSMg01no202_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:13 2005
         (314 letters)



>mm_chr7_123206337_123207050
          Length = 714

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgttgtactacaaagaacattgaaatcatagcatcctcagaaaaatagatatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgttgtactacaaagaacattgaaatcatagcatcctcagaaaaatagatatt 263

                                                                       
Query: 64  actgaaaatcatgaagtaataagccaaactcataaaacaaatatcacatttcctcttata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actgaaaatcatgaagtaataagccaaactcataaaacaaatatcacatttcctcttata 323

                                                                       
Query: 124 catataacctcgactaaattatgggtgtgtgtgtgcatatctatgacatgaaggtagaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catataacctcgactaaattatgggtgtgtgtgtgcatatctatgacatgaaggtagaaa 383

                                                                       
Query: 184 gtgtcattgagaggagaaggagaattctagggagagtggaaagaaagcaggaaaaagcag 243
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 gtgtcattgagaggagaaggagaattctagggagagtggaaggaaagcaggaaaaagcag 443

                                                                       
Query: 244 tggagtatgtcatgaaagcaggagggagtatttgggaaagggaaggggaccagcgaggat 303
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggagtgtgtcatgaaagcaggagggagtatttgggaaagggaaggggaccagcgaggat 503

                    
Query: 304 ggagcaggg 312
           |||||||||
Sbjct: 504 ggagcaggg 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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