BAC Information

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BAC

Clone NameMSMg01-204F19
Chromosome7 (Build37)
Map Location 19,574,378 - 19,574,619
singlet/doubletsinglet
Overlap genenone
Upstream geneCeacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2
Downstream geneP42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204F19.T7 (MSMg01no204_f19.b1)MSMg01-204F19.TJ (MSMg01no204_f19.g1)
ACCAG388772AG388773
length778762
length of high quality
(start - end)		311 (46 - 356)234 (129 - 362)
definitionCHROMAT_FILE: MSMg01no204_f19.b1 PHD_FILE: MSMg01no204_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:52 2005CHROMAT_FILE: MSMg01no204_f19.g1 PHD_FILE: MSMg01no204_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAGAGCCACCTGCCTCTGCCTCCTGAGTGCTGAGATTGAGGACA
TGCGACACCATGATTGGTCTCTGACCTGCTTGGTGTGGTTGGATGGAAAG
AAGAAAAAGCTAGTTTTTTCAAGTGTCAAACCAGCCTGTGCTGAAATACA
GCTATACCAGAAAATGATCTCTGGGGATTAGGAAAGTCCTAGCTACCTTT
TGTGAACATGCTGTTTATTGTGAGACAAGGCCTCTTGTATCCATGGCACC
CTTCAACTCAGGTACATAGCCCATTTGTGAACTTGAACTTCCAACCCTCC
TGTTCTATGTTTTATTATGTTCCCCCCCCCCCCCCGAGATATAATATAAA
GTAAGTGTGGAGTACCCCCCTTTTTTTAAAAAAAAAAAAAAAANGATTTT
AGCCGTCCACCACTATGCTTCCATCCCTCCTCTGTAACATCTTTCCATCT
TCCTCCCACCACCTCATACCTTTATCTTTTCCCCTCTCAATCCTATTCCT
TACCCACCCATTCCATTCCCCCCCTTTCCCTTTTCCCCTCATACCCATCT
TCTCCATTACCCTTTTACCCTCTTCTCTACCTTTAACCCATTTACACCTT
TTCCACAATTCTCAACATTTTACCCCTTTTTTCCTTTAAACCCTATTTTT
CCCCTTCTTCCCCATATCACCCCTAATTCCCCCTATTTTACTCCCTTTTA
TACCTTTAATCCTCCTTTCTTCCTCTTA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTGGCCAAGTTAGTGGGCGGGT
GCCTTTGGGTGCTGGGAGATTGAGCCAAGAGGGAACTGAAGGGCCGCCTA
AGAACCGTAAGAGGGGCAGGAGGGGGTCCAGAACTGCCGCCCAGACCTAT
CTCATATTGTCTTCCAACACAAGTCGTCTGACTGGGAACAGGTTCCCAAA
TAATTCTCAGCCTCCACCTAGACACTTTTAAAATTAAAAATAGAGGGAAA
AAAAGTGTGGAAAGGCAAGTTGTGTTTGTATGCCTTTAATTCTAGCATTC
GGGAGGCAGAGATTTTTTTTTCTCCCCCCCCCCCCCAAGGTCAGCCTAGT
CTACAGAGTTGCAGGTCCCCCCCCCCAAAAAAAAAAAAACCTGTCTTTAT
TATAAAGAGGTAGGAGGCCTGTACAGAGGTTTTACTCCTTTCATATCCCT
CGCCACCACATAAACAACCCTACTTCCCCCCTCTGCGCTATACGCCCCCC
CTACACCTCTTCCTTCTTTTCGTCCTCCACCCCTGTTATGTTTCTTTTCC
ACCTTTCCCTTTCTCTTTCCCTTACCTCCTCTTCTCACTATTCCCTTTAC
TACCGTATACTTTTCTCCTTCTTTTTTTCTCGCCCTCTTTCCGTTTTCTC
CATTTCCTCTTTTCTCACCCGCCTTTCCTTTTATTCCCTCTATCCCTACC
GTTGCTCTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_f19.g1 MSMg01no204_f19.g1 CHROMAT_FILE:
MSMg01no204_f19.g1 PHD_FILE: MSMg01no204_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:52 2005
         (234 letters)



>mm_chr7_19574186_19574819
          Length = 634

 Score =  410 bits (212), Expect = e-119
 Identities = 231/242 (95%), Gaps = 8/242 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagggaactgaagggccgcctaa--------gaaccgtaagaggggcaggagggggtcca 52
           |||||||||||||||||||||||        |||||||||||||||||||||||||||||
Sbjct: 193 gagggaactgaagggccgcctaaaaccctgggaaccgtaagaggggcaggagggggtcca 252

                                                                       
Query: 53  gaactgccgcccagacctatctcatattgtcttccaacacaagtcgtctgactgggaaca 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gaactgccgcccagacctatctcatattgtcttccaacacaagtcgtctgactgggaaca 312

                                                                       
Query: 113 ggttcccaaataattctcagcctccacctagacacttttaaaattaaaaatagagggaaa 172
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 313 ggttcccaaataattctcagcctccacctagacacttttaaaattaaaaatagaggaaaa 372

                                                                       
Query: 173 aaaagtgtggaaaggcaagttgtgtttgtatgcctttaattctagcattcgggaggcaga 232
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 373 aaaagtgtggaaaggcaagttgtgggtgtatgcctttaattctagcattcgggaggcaga 432

             
Query: 233 ga 234
           ||
Sbjct: 433 ga 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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