BAC Information

Click to search

BAC

Clone NameMSMg01-204L14
Chromosome7 (Build37)
Map Location 112,423,521 - 112,423,886
singlet/doubletsinglet
Overlap geneEG668035
Upstream geneEG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686
Downstream geneOlfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204L14.T7 (MSMg01no204_l14.b1)MSMg01-204L14.TJ (MSMg01no204_l14.g1)
ACCAG388986AG388987
length726840
length of high quality
(start - end)		373 (46 - 418)47 (75 - 121)
definitionCHROMAT_FILE: MSMg01no204_l14.b1 PHD_FILE: MSMg01no204_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:22 2005CHROMAT_FILE: MSMg01no204_l14.g1 PHD_FILE: MSMg01no204_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAATAAGTCTTTTAGAAAAAAATCCAGATAGGAACAAAAAACTC
AAACTTTGATTGCTTTTGCTCTCTTTTCCTCAATTTCTTTATGGCGGTCT
TTACAGGCCATGAAATATCTACTTAATCATATATATTTAAAACTTATTTA
TTGCATTATTAAAACAAGTAAGGTATAGAATCAATGATGAGAAAATTTTA
TCAATATTGAGTTTTCAATTACTATTAGTTCTTAATGGTTGTGTGTTTGG
TTTATAGTATAACTAGTTTACATGAAATTGATTTTTTTTATTAATGAGAG
GTACATAAACATATTTGTTTTGAATAATCAACCATAGGTTTTACTTTCTC
ATCAAATGATTATTACCCCCCCTTTGACATATACTGAATACACAAGTAGG
CACACTTGTGTGCACACGGACACATACAGCACAATTCTGTTATGGGTATC
TACTGTTTATATTTCTTGACATTTTTGCACAAAGACCCATTACTTTTATC
CCCATTTAACTTACATCCCTTTCTCTGTCTACTTATATTATGTATCCCAT
TTCATTGCATTCTTTTTGTTCTCTCACCCTTTATCATACTTTCCTTTTTC
CTTCTCCAACATCCTCTTTCCTTAAACATATTTCATTCAACCCAATGTTT
TCATCTCCCACTTTTTTATTATTTTT

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTTTTTTGTTGTTGTTGTTTTTTT
TTCTTTTATTTATTGGATTTTACCCCCTATCAGATCTTTAAGTTATATTG
TTATCTCTGTGTTTATTTAATATAGGTATATAATATTATTCAATATCATG
ATGCATTGATTTATTATCATTAAATCACATAATGAAGTTGATTCGATGAA
AGGTTTATGAATAGTTCATGTTATAACTTTTAAATCTATAAATATTTAAA
GAAGAATAATATTATGAAGATAGAAGAAAAATTTTTTTTTTAATTATAAA
AAAAAAAAAAATTGAAGAAAAAAATTTGTTTTTTCACCACCACCCACCTT
TATAAATTTTTATTTTATTTGTATGTTTGGTGTTGGACCGGGACCTTTCC
CCAAAAAAAATAAAATGTTTAAGAGATTGTTGTCAAATTTAACACTCTCA
CATAGTAGTCATTTTAGTTTTTACTCTATAACAACCGACTGTACAAGTGT
ATTTGATGATATTTTAGTTATGACATTTCTAATTTCACGTGTAGATGTTG
AATGTTATCATATTTGGGGTTTGTGGAATATATTATTTCTTTTTCATATA
GTGTTACATTATGTATACTCTATAAAACCTAACGTGAAATATAAGTTTAA
CTTTATATGGGTCGCGTATGGTTCTGTTTACTGCTACTTTCTACATGGTT
TGGTTAGGGTTTATATGAAATTGTTTGTAATTATTAATACGGATATACAT
GTGTAAGGTTTATGGCGGTGATATAGTGATTGTAATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_l14.b1 MSMg01no204_l14.b1 CHROMAT_FILE:
MSMg01no204_l14.b1 PHD_FILE: MSMg01no204_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:22 2005
         (373 letters)



>mm_chr7_112423317_112424089
          Length = 773

 Score =  692 bits (358), Expect = 0.0
 Identities = 364/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaataagtcttttagaaaaaaatccagataggaacaaaaaactcaaactttga 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaattctcaataagacttttagaaaaaaatccagataggaacaaaaaactcaaactttga 511

                                                                       
Query: 65  ttgcttttgctctcttttcctcaatttctttatggcggtctttacaggccatgaaatatc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 510 ttgcttttgctctcttttcctcaatttctttatggcggtctttacaggccgtgaaatatc 451

                                                                       
Query: 125 tacttaatcatatatatttaaaacttatttattgcattattaaaacaagtaaggtataga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tacttaatcatatatatttaaaacttatttattgcattattaaaacaagtaaggtataga 391

                                                                       
Query: 185 atcaatgatgagaaaattttatcaatattgagttttcaattactattagttcttaatggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atcaatgatgagaaaattttatcaatattgagttttcaattactattagttcttaatggt 331

                                                                       
Query: 245 tgtgtgtttggtttatagtataactagtttacatgaaattgattttttttattaatgaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgtgtgtttggtttatagtataactagtttacatgaaattgattttttttattaatgaga 271

                                                                       
Query: 305 ggtacataaacatatttgttttgaataatcaaccataggttttactttctcatcaaatga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggtacataaacatatttgttttgaataatcaaccataggttttactttctcatcaaatga 211

                 
Query: 365 ttatta 370
           ||||||
Sbjct: 210 ttatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |