BAC Information

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BAC

Clone NameMSMg01-205I03
Chromosome7 (Build37)
Map Location 75,711,035 - 75,711,346
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc28, Ttc23, Dmn, LOC665319, LOC100041771, Igf1r, C330024D12Rik, EG434197, LOC100041800
Downstream geneEG384639, Arrdc4, LOC384741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205I03.T7 (MSMg01no205_i03.b1)MSMg01-205I03.TJ (MSMg01no205_i03.g1)
ACCAG389473AG389474
length735725
length of high quality
(start - end)
320 (46 - 365)604 (77 - 680)
definitionCHROMAT_FILE: MSMg01no205_i03.b1 PHD_FILE: MSMg01no205_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:24 2005CHROMAT_FILE: MSMg01no205_i03.g1 PHD_FILE: MSMg01no205_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGGTTAGCATGGGGAGAGAATTTCAAGCCAAGACACTGGAAGC
TTAGAGAAGTGCTGGTGTCTTGGCCGGGTTCTTCATGTATGGAGCCTTTA
GAGATAGCAGATGAATTTCCCTTTGGAGGATTCTTAGTAGGAGACATCCT
TTAGTTGCTTGCTTCGGCATTATGGCAGGGGTTGTCGTATTACAGGATAT
TTAGCAGCAGCATGCCTGGCCTAGCTATTCACTGGTTAACAATAGCACCA
TCATGAGTCCCAAGATAGAGAATTCAAAAATTAACTCTAGACATTGCCAA
ACATCCTCTGGTGTATTTTGTGGCCAGCACCGCTGCTGCTAGTTGAGAAC
TCTGGTCTTTAAGGGACGACCCGAATATTTTAATCTGAATTATATGGAAG
ATAGTGGTGGAAGTGTGGTTAGGAGGCTGCAAACGTGXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTACATCCTCTGAGGTGTAAGACACCTAAA
CTGATTTTGTACTGTGACGGATTATACTTTTTCTAACGTTTCATCTAGTC
TATTTTATGATGGCAAATTTTTTTTTCCTTTTCTTATCCCCCTAACTGTG
GTATATATCCCTCCCTTACTTTTGCATTACATCTCGTGCCTCTAAAATAA
CCCTGGAATTCTTCAAGGTCTCCACGTAGTGATTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGCCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAATGCAGGCTTGTACAACCACTCTGGAA
AACAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTTTTTATATCCAGAAGATGCCCCATCTGGTAAG
AAGGACACATGCTCCACTATGCCCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGGA
TTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTATTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTG
CTAAACACATGAAACTCAAGAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_i03.b1 MSMg01no205_i03.b1 CHROMAT_FILE:
MSMg01no205_i03.b1 PHD_FILE: MSMg01no205_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:24 2005
         (320 letters)



>mm_chr7_75710830_75711550
          Length = 721

 Score =  557 bits (288), Expect = e-163
 Identities = 306/314 (97%), Gaps = 5/314 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattccttggttagcatggggagagaatttcaagccaagacactggaagcttagagaagt 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattccttggttagcatggggagagaatttcaagccaagacactggaagcttagagaagt 265

                                                                       
Query: 66  gctggtgtcttggccgg---gttcttcatgtatggagcctttagagatagcagatgaatt 122
           |||||||||||||  ||   ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 266 gctggtgtcttgg--ggtgggttcttcatgtatggagcctttagagaaagcagatgaatt 323

                                                                       
Query: 123 tccctttggaggattcttagtaggagacatcctttagttgcttgcttcggcattatggca 182
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 tccctttggaggattcttagtaggagacatcctttagttgcttgctccggcattatggca 383

                                                                       
Query: 183 ggggttgtcgtattacaggatatttagcagcagcatgcctggcctagctattcactggtt 242
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 ggggttgtcgtattacaggatatttagcagcagcatgcctggcctagctactcactggtt 443

                                                                       
Query: 243 aacaatagcaccatcatgagtcccaagatagagaattcaaaaattaactctagacattgc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aacaatagcaccatcatgagtcccaagatagagaattcaaaaattaactctagacattgc 503

                         
Query: 303 caaacatcctctgg 316
           ||||||||||||||
Sbjct: 504 caaacatcctctgg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space:   221432
Effective search space used:   221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)