Query= MSMg01no205_k16.b1 MSMg01no205_k16.b1 CHROMAT_FILE:
MSMg01no205_k16.b1 PHD_FILE: MSMg01no205_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:35 2005
(681 letters)
>mm_chr7_106945363_106946443
Length = 1081
Score = 948 bits (490), Expect = 0.0
Identities = 658/758 (86%), Gaps = 84/758 (11%)
Strand = Plus / Plus
Query: 4 ggaattccaggaagactgcagagggctcgctccatgttcttccccctgtaggcatgcacg 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggaagagtgcagagggctcgctccatgttcttccccctgtaggcatgcacg 263
Query: 64 gaggaagatcagagccgtttccacagcccccacaacagaattcacatgccagcatgcagc 123
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 gaggaagatcagagccgtttccacagcccccacaacagaattcacaggccagcatgcagc 323
Query: 124 ccagtggttacacacgaggtagggttgaccaccttaaaaacaagctgagccttgggtatc 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccagtggttacagacgaggtagggttgaccaccttaaaaacaagctgagccttgggtatc 383
Query: 184 tggcaaaatagaagggaaacctagctgccttcctctgaacacattgacaatgggcaggtg 243
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 384 tggcaaaatagaagggaaacctagctgcctgcctctgaacacattggcaatgggcaggtg 443
Query: 244 aaaaagaagaactggacattgtgcagaaaagccaagcccaccaactcccagctaaccctg 303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagaagaagaactggacattgtgcagaaaagccaagcccaccaactcccagctaaccctg 503
Query: 304 ggtacacca-------------ata---------aggc----t--a-a------------ 322
||||||||| ||| |||| | | |
Sbjct: 504 ggtacaccaaatgaactatcttataaaaaaccagaggcagattccacattcctctgtgtg 563
Query: 323 ------------------tgagtg-atg--ccg----c-ctca-gg-g-caat-----tt 348
|| ||| ||| ||| | | || || | |||| |
Sbjct: 564 tgtgtgtgtgtgtgtgtgtgtgtgtatgcaccgttatcac-catggagacaataaggct- 621
Query: 349 tgaa--agt---tcagcctcagggcaactttgaaagttcaggcactttgaaagaacagac 403
|| ||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 622 --aatgagtgacgccgcctcagggcaattttgaaagttcaggcactttgaaagaacagac 679
Query: 404 ttcctagggaatcctcaggagtccttagcagaaatgcctaactgttgggatatggagcct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcctagggaatcctcaggagtccttagcagaaatgcctaactgttgggatatggagcct 739
Query: 464 gaagagaccacctccaatagccagacaggtcccccagcagagggatggggacaccaaccc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaagagaccacctccaatagccagacaggtcccccagcagagggatggggacaccaaccc 799
Query: 524 acctacaaacttttgatccaaaattggtcctgtctaaaagaaatgcaggaacaaagatgg 583
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 800 acctacaaacttttgatccaaaattggtcttgtctaaaagaaatgcaggaacaaagatgg 859
Query: 584 agcagagactgaaggaatggcccattttgagtcccatcccatgggtaggcaccaatccct 643
|| |||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct: 860 agaagagactgaaggaatggcccattttgagccccatcccatggatagacaccaatccct 919
Query: 644 cacactattgatgatgctatgttgtgcttgctggcagg 681
||||||||||||||||||||||||||||||||| ||||
Sbjct: 920 cacactattgatgatgctatgttgtgcttgctgacagg 957
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no205_k16.g1 MSMg01no205_k16.g1 CHROMAT_FILE:
MSMg01no205_k16.g1 PHD_FILE: MSMg01no205_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:35 2005
(552 letters)
>mm_chr7_106988530_106989481
Length = 952
Score = 1000 bits (517), Expect = 0.0
Identities = 526/529 (99%)
Strand = Plus / Minus
Query: 1 tttcattctgcctataaccagaagacacagttcctatagaaagatctccatatctacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tttcattctgcctataaccagaagacacagttcctatagaaagatctccatatctacatt 816
Query: 61 tttatcctagaccttttctcgggactgttgctatcctgcttcctgtctgactggacctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tttatcctagaccttttctcgggactgttgctatcctgcttcctgtctgactggacctaa 756
Query: 121 tgggcatctcagggttaacatgtccaaaggtcacctctgttccccattgttctgcctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgggcatctcagggttaacatgtccaaaggtcacctctgttccccattgttctgcctgct 696
Query: 181 cttcccctagttttcctctctgggtaagtggcagtttcattcctaacaactccagcgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cttcccctagttttcctctctgggtaagtggcagtttcattcctaacaactccagcgttc 636
Query: 241 ttctaatctgccagctctaatggtactaacactcacttgtgtggaccctgggagtttctc 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttctaatctgccagctctaatggcactaacactcacttgtgtggaccctgggagtttctc 576
Query: 301 tccctgcttgaagtcatggccagcagagcgggagaagcaaatgatctgtaaactgttcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tccctgcttgaagtcatggccagcagagcgggagaagcaaatgatctgtaaactgttcag 516
Query: 361 aagaaaggctaagttctgaggacagattagcagtcctcatgtatgtgacatgtactctac 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 515 aagaaaggctaagttctgaggacagattagcagtcctcatgtgtgtgacatgtactctac 456
Query: 421 atgcgtgtgcagatacaccctcctctgctggtctcacctcagggcctctgtactttctgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atgcgtgtgcagatacaccctcctctgctggtctcacctcagggcctctgtactttctgg 396
Query: 481 tccctccacatgtagtacttttcttggataacctggtgttctcatcttc 529
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 395 tccctccacatgtagtacttttcttggatagcctggtgttctcatcttc 347
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
