BAC Information

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BAC

Clone NameMSMg01-206A19
Chromosome7 (Build37)
Map Location 111,740,127 - 111,740,818
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654
Downstream geneOlfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206A19.T7 (MSMg01no206_a19.b1)MSMg01-206A19.TJ (MSMg01no206_a19.g1)
ACCAG389807AG389808
length742743
length of high quality
(start - end)		697 (46 - 742)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no206_a19.b1 PHD_FILE: MSMg01no206_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:05 2005CHROMAT_FILE: MSMg01no206_a19.g1 PHD_FILE: MSMg01no206_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATCAGATAACGCTTAAACAGTGATCAGACAAGTGATAAGTCAAG
AGATCGTAATTTGTATATACTCTCACTCCCGTTCAATTTTATATGAATTT
TCTGCCACTTCCTCAAATATAGTTTTAATAGTAAAATTATTCAATATTGT
TTTTGTATATTTTTAAAACATTATTTTTAAATTTTTGCAATACAAAGTGT
CACAATGACACCACTGTCCACTTTAATATAAGCAGAACTGTTTCTTTGCT
AACCTAAAAAATGTAACTGCAAGTGGATCAGTGATGTCTGGGTAGATGGA
ACAGATTGGGGATCACTGTTTTTGTTGGAAGGATATTTTAAGTGTTACCA
AATAACTAAACATGAACCCACCAAAAGCATGTCCTTGACAAACAATAGTC
ATCTTAAACATCTTCTATTAAAAAAAAATTTACAATGACGCCAGTATCAT
CTGTGGACAGGCTGAATTACAGTTTATAATTTAGACAAACTGGAATATAT
TAAGGTTGGTGTTTCTTTTTTTATTTGTCCTCGTGGCTATTCCACGCCAG
GACAGATATATCTATTTAGTTATTTCAAAGCTCCATGGCAGTGGTTTTCA
ACCCTCCTAATGCTGCAAGCATTTAATACAGTTTCTCGCCATTGTCTGGT
GCATTGGGTCCCTGGGTAAGGTCACAGCAATCAGGACACAGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACTTGTGAAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTACAAGCTTGTACAACCACTCTGGAA
GTCAGTCTGGTGGTTCCTTAGAAAATTGGACATAGTACTACCGGAGGACC
CAGCAATACCTCTTCTGGTCATATCGCCCCAAGATGTCCCAACCGGTAAG
AAGGACACATGCTCCACCACGCCCATAGAAGACTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATGCAGAAAA
TGTGGTACATTTACACAATGGAGTGCTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACAATCACAAAGGAACGCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACTTAGGATACCCAAGATATAAGATGCAATTTG
CTAAACCCATGAAACTCAAGAAGAATGAAGACCAATGCGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_a19.b1 MSMg01no206_a19.b1 CHROMAT_FILE:
MSMg01no206_a19.b1 PHD_FILE: MSMg01no206_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:05 2005
         (697 letters)



>mm_chr7_111739923_111741018
          Length = 1096

 Score = 1270 bits (657), Expect = 0.0
 Identities = 684/693 (98%), Gaps = 1/693 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatcagataacgcttaaacagtgatcagacaagtgataagtcaagagatcgtaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatcagataaagcttaaacagtgatcagacaagtgataagtcaagagatcgtaa 264

                                                                       
Query: 65  tttgtatatactctcactcccgttcaattttatatgaattttctgccacttcctcaaata 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgtatatactctca-tcccgttcaattttatatgaattttctgccacttcctcaaata 323

                                                                       
Query: 125 tagttttaatagtaaaattattcaatattgtttttgtatatttttaaaacattattttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagttttaatagtaaaattattcaatattgtttttgtatatttttaaaacattattttta 383

                                                                       
Query: 185 aatttttgcaatacaaagtgtcacaatgacaccactgtccactttaatataagcagaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatttttgcaatacaaagtgtcacaatgacaccactgtccactttaatataagcagaact 443

                                                                       
Query: 245 gtttctttgctaacctaaaaaatgtaactgcaagtggatcagtgatgtctgggtagatgg 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtttctttgataacctaaaaaatgtaactgcaagtggatcagtgatgtctgggtagatgg 503

                                                                       
Query: 305 aacagattggggatcactgtttttgttggaaggatattttaagtgttaccaaataactaa 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 aacagattggggatcactgtttttgttggaagaatattttaagtgttaccaaataactaa 563

                                                                       
Query: 365 acatgaacccaccaaaagcatgtccttgacaaacaatagtcatcttaaacatcttctatt 424
           |||||||   |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acatgaatttaagaaaagcatgtccttgacaaacaatagtcatcttaaacatcttctatt 623

                                                                       
Query: 425 aaaaaaaaatttacaatgacgccagtatcatctgtggacaggctgaattacagtttataa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaaaaaaatttacaatgacgccagtatcatctgtggacaggctgaattacagtttataa 683

                                                                       
Query: 485 tttagacaaactggaatatattaaggttggtgtttctttttttatttgtcctcgtggcta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttagacaaactggaatatattaaggttggtgtttctttttttatttgtcctcgtggcta 743

                                                                       
Query: 545 ttccacgccaggacagatatatctatttagttatttcaaagctccatggcagtggttttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttccacgccaggacagatatatctatttagttatttcaaagctccatggcagtggttttc 803

                                                                       
Query: 605 aaccctcctaatgctgcaagcatttaatacagtttctcgccattgtctggtgcattgggt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaccctcctaatgctgcaagcatttaatacagtttctcgccattgtctggtgcattgggt 863

                                            
Query: 665 ccctgggtaaggtcacagcaatcaggacacagg 697
           |||||||||||||||||||||||||||||||||
Sbjct: 864 ccctgggtaaggtcacagcaatcaggacacagg 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1096
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1086
Effective search space:   746082
Effective search space used:   746082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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