BAC Information

Click to search

BAC

Clone NameMSMg01-206B23
Chromosome7 (Build37)
Map Location 61,409,283 - 61,409,641
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1865, LOC100040718, LOC668789
Downstream geneMrps33p, LOC622146, Luzp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206B23.T7 (MSMg01no206_b23.b1)MSMg01-206B23.TJ (MSMg01no206_b23.g1)
ACCAG389851AG389852
length835765
length of high quality
(start - end)		266 (60 - 325)359 (384 - 742)
definitionCHROMAT_FILE: MSMg01no206_b23.b1 PHD_FILE: MSMg01no206_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:11 2005CHROMAT_FILE: MSMg01no206_b23.g1 PHD_FILE: MSMg01no206_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXGGTCCTGATCATTCCTGCTGACTCATGCCAATTCAGCAGAG
GCCTTGCAGTTTCTGCTGGATTATGCCACCCTTGCTGATTCAGGTTGGTG
ACACTCTTGAACAGGACTATTGGTATCCTGATACTACTGAACTTGACTGC
TGGTATTCTGACAAGAAGAGACCGGAATCACCTCAAGAATTACTTATAAA
CAAGTTCACATCCCCTTGTCCTATTTACTATCTTTCTGTCCTACCTTTAG
ATGGTGAGAAGATGGGGTGGGGGTTTTANNAANNNNNNNNNNNTTNNTTT
TTTTNTTTTTTTTTTTTTTTTTTCCTCCCCCCCTCTTTCCTTTTCTCTCT
TCCTCTCCTTCTTGTTGTCCCCCCCCCCNCCCTTTTATTCTCTTCCTTTT
TTTCTTGCTCCCTTTCTTTTTCTCTTGTTTTTCCCTTCTTTGCCTCTTTT
TTTTTTGTTTTGTTCTCTCCTCCCCTTTCTTCGCCTTTTTTTCTCTTCCT
CTCTTCCTTGTTTCCGCTTTTTCCTCTCTCCTTTCCTCTGTTCCCCTTGT
TTTTGTTCCTTTTTTCCCTCTCTTTTCTGTTCTTTACCCTTCCGATCTCA
TATTTTTTTCTTGTGCCTAATTCCATTTTAGTATTCCTGCTTGTCCCCGC
TTTTCCCCTTGCCCCTTTTTTGCTTTGCATTCTTCTTTTTTTGCCTCTTG
CTTTATACCTCTCTTTTCCTCCGTTTTGCATGTGTTCTCTCTTGATCTCC
CTTTTTGCTCCCTTTGTTCTTACACCTTACCTACT

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGAATCTTCAGAGTATATAAA
TACTAGGGTCCCTAGAGGGGGCTTGTTCTTGGATTGACACTGATTGCTAT
TGGATGTGATTTGTTAAGTAGTGATGTACAAAGTGGAACAACAGAAGAAA
AAGTTAGATATCCTGATGGTGGAGATCAAACATGAACAAAGGTAATCAAA
CCCTAATCAGCATAAAATAGTCTAATGATAACACTTCCTTCCCCTCTTTC
TCTCCTATCTAGTGTTAGGAGGTTGCAAGGGTGGAAGAGTAAGAACCAGC
AAAGTAGCCAAAAGGCTGGTTAAAGATAGGCAACTGGCTTTATTTGAATT
TGGTAAAAGCTATTGTGAGCCACCACTTGTAAATCTTTAATCACAAGAAG
CAAGACACTTTTTAATTGTCTCATAGACTGATCTGAGAAAAGGATCTGGT
CACACAAAAGTGTTGAATAAATGTAAAAATCAATAACAAGATCTAATGAA
AAGAAAACTATGCACTGAGAAAATACCCATCTTCAACCCAGGAAGGTTGT
AATGACAATTTGCATAATATAATAATTATACAAATACTATTTTTAAAAGA
AAACGCCATTGAGTGGTGACAAAATTGCATGGTGTATACTGCGTACCAGC
TACAATGTTCTGACTGACAAGTGACATGAAAAACAACCAAAAAAGCCAAT
GTGGCATACATTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_b23.g1 MSMg01no206_b23.g1 CHROMAT_FILE:
MSMg01no206_b23.g1 PHD_FILE: MSMg01no206_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:12 2005
         (359 letters)



>mm_chr7_61409212_61409970
          Length = 759

 Score =  640 bits (331), Expect = 0.0
 Identities = 352/359 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggctttatttgaatttggtaaaagctattgtgagccaccacttgtaaatctttaatca 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 430 ctggctttatttgaatttggtaaaagctattgtgagccagcacttgtaaatctttaatca 371

                                                                       
Query: 61  caagaagcaagacactttttaattgtctcatagactgatctgagaaaaggatctggtcac 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 370 caagaagcaagacactttttaattgtctcatagattgatctgagaaaaggatctggtcac 311

                                                                       
Query: 121 acaaaagtgttgaataaatgtaaaaatcaataacaagatctaatgaaaagaaaactatgc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acaaatgtgttgaataaatgtaaaaatcaataacaagatctaatgaaaagaaaactatgc 251

                                                                       
Query: 181 actgagaaaatacccatcttcaacccaggaaggttgtaatgacaatttgcataatataat 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 250 actgagaaaatactcatcttcaacccaggaaggttgtaatgacaatttgcatagtataat 191

                                                                       
Query: 241 aattatacaaatactatttttaaaagaaaacgccattgagtggtgacaaaattgcatggt 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 190 aattatacaaatactatttttaaaagaaaacaccattgagtggtgacaaaattgcatggt 131

                                                                      
Query: 301 gtatactgcgtaccagctacaatgttctgactgacaagtgacatgaaaaacaaccaaaa 359
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gtatactgcataccagctacaatgttctgactgacaagtgacatgaaaaacaaccaaaa 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |