BAC Information

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BAC

Clone NameMSMg01-207G18
Chromosome7 (Build37)
Map Location 131,578,412 - 131,578,794
singlet/doubletsinglet
Overlap genenone
Upstream geneAqp8, Zkscan2, LOC100043482, EG628779
Downstream geneEG545999, LOC670828, 4933440M02Rik, LOC100043014
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207G18.T7 (MSMg01no207_g18.b1)MSMg01-207G18.TJ (MSMg01no207_g18.g1)
ACCAG390654AG390655
length1,2751,269
length of high quality
(start - end)
377 (80 - 456)382 (69 - 450)
definitionCHROMAT_FILE: MSMg01no207_g18.b1 PHD_FILE: MSMg01no207_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:20 2005CHROMAT_FILE: MSMg01no207_g18.g1 PHD_FILE: MSMg01no207_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNGGGGACACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGA
ATTCTCACCTGAGGAATACAAACCTTTCAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCCTGGAAATGCAAATCCCAACAACCCTGAGATTCC
ACTTCACACCAGTCAGAATGTCTAAGATCAAAAATTCCCGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCACTCTGGAAATCTGTCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGTTTTTTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACTTTTTTTTGCCCCCCCCCCAATGTGGTACATTTACACAATGAA
AAAGAAGTCAGCTATTATAAAGAATGAATTTATAAAATTCCTAGCCCAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTA
GGATACCCTAGATATAAGATACTATTTCCTAAACACATGAAACTCAAGAA
AAATGAAGACTGAAGTGTGTACACTATGCCCCTCCTTAGAAATGTGAACA
AAACACCCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGATTTTACA
GGATGTACCATGTAAATACTGCCATATTCCGGTATCCTCCTTTTATTCTG
CTTCCTAACGTTGACACCATTGCTTACACTTATTAAGATTTTATCTAAAG
GACCCTAATGTATTGTCTTCTTGTGAGATTATGTCAGGGTTCTTATTAAC
AACAATTGTATTGTCACATTCACTTAAGGAGGTATCTTATGTTTTCTATT
GTTTGTTTTTTTTAAGGATCTAGGGAATTAAGGTTATTTGTTACTCTTAA
TTTGGAATTATTTTTTTAATTTTTTCTTATCCTCGGATTTTTTTGTTCTT
CTTGTATTTATTTTATTAGATGGTCTTAATTCATCTTCTTTTTATATTAG
TCTCTATTTACTCTCCTACTTTTTTTTCCTTTATTATTTTTTTTTTCTCC
ATTATATGTAATGTGTTATTATTCTATCTATTTTATTATTTTATTCCATT
TTTCTTCTTTTATTATCATATTTTT
NNTTGAGACTGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGTTTTTAATAGCTGAGTTATGATTCTTTT
AAAGAGGACTCTAAAGATGGGTGGGCCCAGAAGGGGATATCTGGAATGAG
TAGGAGGAGGGTGGATATGATCAAACTGCATCCTATGAAGTTCTCATATA
ACTAATAAAATAAGACAAAAAGTAAAATATTCGTTAAATGTCTGTCACCA
TTTGCATAGATCCTGACCACTTTGTGACTTCCTCTGCAATAGCTATAGGT
ACTAATTATATTCCATAGCTTTCTAATATTGGGAAAGTTATCTCCCTCTC
TGACTTGCCTGCTAATCTTTAAGATAGACATGTTTGCTCCAATCATGTGT
ATTTTGTTAAGTGCTGAACTCCCTCTAGGTGGTTGATAGCACACCAGGTG
TTTTTTTTTTTCCCGCCCCCAGAAGCTGTTAATTTAAGAGAAAAAAAAGA
AGAGTATTAGACAATCACAGTCATACCAGACCGTGAAAAACACTCCTCTT
CCACATGACAACTCTCTGTGCAGCTGGCACAATTAGTCTATAAATCTTTT
GAAGTGGGTCAGTGAGGCAATGGGACAGCAAATAACAGCTCGCTCTGGGA
TACTATGGTTTTGACTTTTGCTCATCTCTGCTTCATGTTCACTACCATAC
ATATTCAAGTACTTATTTCATGAAGTAGTTTAATTTCTTGTGGATGTAGA
AATGCCCATGATACCTGCTTTTATGATTTGTTTATTGAGTATGATTTATG
AATTATGGTAATTAGAAATGTTATCTGCCTTTTTAGCTCTTCCTCCTTTG
CAATCTTACTCTGGGGAATTATTTCCATTCTTTGAACTGTCATATATGTA
TATCCCTTTTTGTTTATTGTTTAATTGTTCTTTTAATATTATTTCCTTTT
GGATGATGTTAATGATTAGTCATTATAGGTTTTCCTTCCTTTGTTTTTGA
TTTTTTAAAATATTTTGGAATTTTTTACTGGGTTTTCTTCGAACTTCTTT
TGTTTAAAATAATTGTTTTGGTCCTATTTTTTTTACTAAAATTTTTTATA
TAATTCNTTATTATTTTTTTCTTTATATTTAAATATTGTTATATATATCT
GTTTTTTTTTTTTTATTCTTAATTTTTATATTTTCTTATCTATTTTTTTT
ATTATCTATCTCTTCTATCTATTTTATGTATTTATATTGTTTTTTTTTCT
CCTTCTTCTTCTTTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_g18.g1 MSMg01no207_g18.g1 CHROMAT_FILE:
MSMg01no207_g18.g1 PHD_FILE: MSMg01no207_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:20 2005
         (382 letters)



>mm_chr7_131578212_131578994
          Length = 783

 Score =  654 bits (338), Expect = 0.0
 Identities = 372/384 (96%), Gaps = 3/384 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtttttaatagctgagttatgattcttttaaagaggactctaaagatgggtgggccc 60
           ||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||
Sbjct: 201 actgtttttaatagctgagttatgattcttttaaagaggacac-aaagatgagtgggtcc 259

                                                                       
Query: 61  agaaggggatatctggaatgagtaggagga--gggtggatatgatcaaactgcatcctat 118
           ||||||||||||||||||||||||||||||  |||||||||||||||||||||||  |||
Sbjct: 260 agaaggggatatctggaatgagtaggaggagtgggtggatatgatcaaactgcattatat 319

                                                                       
Query: 119 gaagttctcatataactaataaaataagacaaaaagtaaaatattcgttaaatgtctgtc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaagttctcatataactaataaaataagacaaaaagtaaaatattcgttaaatgtctgtc 379

                                                                       
Query: 179 accatttgcatagatcctgaccactttgtgacttcctctgcaatagctataggtactaat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 accatttgcatagatcctgaccactttgtgacttcctctgcaatagctataggtactaat 439

                                                                       
Query: 239 tatattccatagctttctaatattgggaaagttatctccctctctgacttgcctgctaat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatattccatagctttctaatattgggaaagttatctccctctctgacttgcctgctaat 499

                                                                       
Query: 299 ctttaagatagacatgtttgctccaatcatgtgtattttgttaagtgctgaactccctct 358
           ||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||
Sbjct: 500 ctttaagatagacatgtttgctccaatcatgtggaagctgttaagtgctgaactccctct 559

                                   
Query: 359 aggtggttgatagcacaccaggtg 382
           ||||||||||||||||||||||||
Sbjct: 560 aggtggttgatagcacaccaggtg 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 783
Length adjustment: 9
Effective length of query: 373
Effective length of database: 774
Effective search space:   288702
Effective search space used:   288702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)