Query= MSMg01no207_n24.b1 MSMg01no207_n24.b1 CHROMAT_FILE:
MSMg01no207_n24.b1 PHD_FILE: MSMg01no207_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:22 2005
(662 letters)
>mm_chr7_75714044_75715105
Length = 1062
Score = 1257 bits (650), Expect = 0.0
Identities = 661/668 (98%), Gaps = 6/668 (0%)
Strand = Plus / Minus
Query: 1 ctgggcttagtcctttatctgaccgtgggtttaggaggaaaattgaatgaaactctttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ctgggcttagtcctttatctgaccgtgggtttaggaggaaaattgaatgaaactctttca 893
Query: 61 caaattcccaggtagtgcttatgctgtaaatacagggaccacactgtgagttgccagtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 caaattcccaggtagtgcttatgctgtaaatacagggaccacactgtgagttgccagtct 833
Query: 121 gaagagcagtgcgccccactgacgtcaggcagctgatggtgcacgctggcttacaaagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gaagagcagtgcgccccactgacgtcaggcagctgatggtgcacgctggcttacaaagag 773
Query: 181 gcaacactgggagatcatcaatggcaaagcttatggcaaacatcctacaaccatccagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gcaacactgggagatcatcaatggcaaagcttatggcaaacatcctacaaccatccagtg 713
Query: 241 gagatgatacctaaacactaagtcagccctgacttcattaacagtcttcaaaccctaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gagatgatacctaaacactaagtcagccctgacttcattaacagtcttcaaaccctaaaa 653
Query: 301 agtaccctggtttgtcagaggtcagcccaccagttagctggtggcagaagagaaatgctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agtaccctggtttgtcagaggtcagcccaccagttagctggtggcagaagagaaatgctc 593
Query: 361 gcatgcacgccatgtgcaagcaaatgtccaatccttattcacaacacactcaaactctat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gcatgcacgccatgtgcaagcaaatgtccaatccttattcacaacacactcaaactctat 533
Query: 421 acaagcagatttccaacaagaataacctgaacaaagtgaactatgtattcaaacagtaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 acaagcagatttccaacaagaataacctgaacaaagtgaactatgtattcaaacagtaat 473
Query: 481 atcatactgcatttaagaaaaaaaaagaactatagccatgtgatagccctgcgcagcgac 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atcataccgcatttaagaaaaaaaaagaactatagccatgtgatagccctgcgcagcgac 413
Query: 541 attgcatggatgaatctcagagaagtgagaggaaatgttctctgttctggatgtttatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 attgcatggatgaatctcagagaagtgagaggaaatgttctctgttctggatgtttatga 353
Query: 601 aattaatctgatttggatgcataacggttcctttggggaag------cggaaaagaattg 654
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 352 aattaatctgatttggatgcataacggttcctttggggaagcagggacggaaaagaattg 293
Query: 655 aaggggaa 662
||||||||
Sbjct: 292 aaggggaa 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no207_n24.g1 MSMg01no207_n24.g1 CHROMAT_FILE:
MSMg01no207_n24.g1 PHD_FILE: MSMg01no207_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:22 2005
(735 letters)
>mm_chr7_75671316_75672449
Length = 1134
Score = 1299 bits (672), Expect = 0.0
Identities = 720/736 (97%), Gaps = 2/736 (0%)
Strand = Plus / Plus
Query: 1 taagcagctgaagaaaactgtggatccctgcatggaagaattcctgtctttctttgtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 taagcagctgaagaaaactgtggatccctgcatggaagaattcctgtctttctttgtcat 259
Query: 61 aaggaggataaacacatggcaagttgaaatttccttaagagagcttcacagagaggtaac 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 aaggaggataaacacatggcaagttgaaatttccttaagagagcttcactgagaggtaac 319
Query: 121 ccaaattcagaaagacaaatgctatggtttctctcattggcagatgttagcttcagactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 320 ccaaattcagaaagacaaatgctatggtttctctcattggcagatgttagcttcaaactt 379
Query: 181 tcagatgtgtgttttatttggaagaaccaacgaggtcagcaaaatgtaagggagggagct 240
||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 380 tcagatgtgtgttctatttggaagaaccaaagaggtcaggaaaatgtaagggagggagct 439
Query: 241 ggatttcaagcaatgagagaacagagtgatataaaggcctaaaagggaatagtggaacag 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggatttcaagcaacgagagaacagagtgatataaaggcctaaaagggaatagtggaacag 499
Query: 301 gaagagtcttagtgagggttttactgctgtgaacagacaccatgaccaatacaagtctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaagagtcttagtgagggttttactgctgtgaacagacaccatgaccaatacaagtctta 559
Query: 361 taaagaacatttaatttggtgctggcttacaggttcataggttcagtccattatcatcaa 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taaagaacatttaatttggggctggcttacaggttcataggttcagtccattatcatcaa 619
Query: 421 ggcaggaggagaatgacaaaatccaggcaggcatggtgcaggcagaactgagagttctac 480
||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct: 620 ggcaggaggagcatgacaacatccaggcaggcatggtacaggcagagctgagagttctac 679
Query: 481 atcttcatctgaaggctgctagcagaatactggcttccaggcagctaagacaatggtatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atcttcatctgaaggctgctagcagaatactggcttccaggcagctaagacaatggtatt 739
Query: 541 aaagcccacattcatagtgtcacacctactccaacaagttcacacctccaaatagtgcca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaagcccacattcatagtgtcacacctactccaacaagttcacacctccaaatagtgcca 799
Query: 601 ttccctggaccaggcatatacaaatcatca-aggaaggtttagatggggagagttatggg 659
|||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 800 ttccctggaccaggcatatacaaaccattacaggaaggtttagatggggagagttatggg 859
Query: 660 aggacagggcagagaagggaatggagctagtaagtaaaattagagttatatggaaatgta 719
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 860 aggacagggcagagaagggaatggagctagtaagtaaaattagagt-atatggaaatgta 918
Query: 720 ctggtatggaaatctt 735
||| ||||||||||||
Sbjct: 919 ctgttatggaaatctt 934
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1134
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1124
Effective search space: 814900
Effective search space used: 814900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
