BAC Information

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BAC

Clone NameMSMg01-208M12
Chromosome7 (Build37)
Map Location 50,885,802 - 50,885,924
singlet/doubletsinglet
Overlap genenone
Upstream geneC330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik
Downstream geneCeacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208M12.T7 (MSMg01no208_m12.b1)MSMg01-208M12.TJ (MSMg01no208_m12.g1)
ACCAG391551AG391552
length702705
length of high quality
(start - end)
271 (42 - 312)231 (119 - 349)
definitionCHROMAT_FILE: MSMg01no208_m12.b1 PHD_FILE: MSMg01no208_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:42 2005CHROMAT_FILE: MSMg01no208_m12.g1 PHD_FILE: MSMg01no208_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCCAAATTTGCTATCTACTCCAGCCCAGCCTCAGCCAAGATCAACCTG
GTGGACATCAGCCCAAATGCCCTGATGTCTTAGCTAATATTTTAGTAAGC
TTGGGTGAATGGGCCCTAATACTGCCCCTGGTATGAGTTGCTTGCTGTCT
ACTGTAATATGATCTGTTGTTGAAGGCTTTACTAAAATTAAAAAAAACAA
AAACAAACAAACAAAAAAAACCACATCACTACATAAGGTCTCTCACTGAT
ATAAAACCACTCTCTTTTTTGATTCATCACGTAAGCATCTTCCAGTCACA
GTTTNGATAAGTCTCTNTTCCATGTACCTGTGTGCTAAGTGTGTGNTAAG
TGTGTGCTACCCCCCCACAAAAAAAAAAAGGCCTTCCCACGATCAGCACA
CACAAAAGCTTTCTCTTATGCATGAATTCAGTGACCCAGCTATAGCCACT
GTATTTCAAAGCATCTCTCCTATATGAAATCTCTGACGGAAGACCTTTCC
AAATTAAATATCCTGTAGCTACATGTAACGAATTTGTTGATGCCCCTTTA
GCTGGGATCCACTGCTTTATGACTATCCCCAGACGTCTGTTTTTTTTATC
AATTCTCCTCATACACAACAGTATGCTTTATGTATAAGTTCTCCTCTATA
CG
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACTGGCGAAAAGCCATACACAT
GCAGTGACTGTGGGAAAATGTTTGTTTGTGCATCAAATCTAACAAAACAT
TGTCGATTTCACACAGGGGAAAAGCCTTATGAGTGCCCTGACTGTGGGAA
ATCTTTCAGTATTAAATCTAACCTGCTTGCACACCATCGAATTCACACCA
GTGAAGGACCTTACAAATGCTTTGACTGTGGAGAATCATTCAGGAAAATA
TCCCAATTGAAGGTACACCATCAAATTCACACTGATCGTAAATCTTTTGA
ATGTTCTGTTTGTGGAACGCCCTCCCCCCAAAAGTCAGTCCTCACCACAC
ATCAAAGAATTCACAGCCCCAAAAAATGTTACCCATGTAGTGACTGGGGG
AAGTTGTTTCTTTATGCTTCAGATCTGAAGAAGCACTGTCGATTTCACAC
AGGGGAGAAGCCTTACAAATGCCATGACTGTGGAAAATCATACAGGGTGA
AGTCGCACCTACACGTGCATCTTCGCATTCAAACTGGTGAGAGACCTTAC
AAATGTGACGACTGTGGAAAGCCATTCAAAAAAAACTCTCACCTACAAAT
GCTTCACCAAACTCATACTGGGGAAAAGCCTTACAAATGTTCTTGACTGG
GCGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_m12.b1 MSMg01no208_m12.b1 CHROMAT_FILE:
MSMg01no208_m12.b1 PHD_FILE: MSMg01no208_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:42 2005
         (271 letters)



>mm_chr7_50885593_50886263
          Length = 671

 Score =  199 bits (103), Expect = 1e-55
 Identities = 118/123 (95%)
 Strand = Plus / Minus

                                                                       
Query: 10  attccaaatttgctatctactccagcccagcctcagccaagatcaacctggtggacatca 69
           |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 attccaaatagggtatctactccagcccagcctcagccaagatcaacctggtggacatca 273

                                                                       
Query: 70  gcccaaatgccctgatgtcttagctaatattttagtaagcttgggtgaatgggccctaat 129
           ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 272 gcccaaatgtcctgatgtcttagctaacattttagtaagcttgggtgaatgggccctaat 213

              
Query: 130 act 132
           |||
Sbjct: 212 act 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)