BAC Information

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BAC

Clone NameMSMg01-209F10
Chromosome7 (Build37)
Map Location 35,050,581 - 35,050,811
singlet/doubletsinglet
Overlap gene4931406P16Rik
Upstream geneEG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, EG619734
Downstream geneLsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209F10.T7 (MSMg01no209_f10.b1)MSMg01-209F10.TJ (MSMg01no209_f10.g1)
ACCAG391899AG391900
length721733
length of high quality
(start - end)
317 (45 - 361)243 (77 - 319)
definitionCHROMAT_FILE: MSMg01no209_f10.b1 PHD_FILE: MSMg01no209_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:26 2005CHROMAT_FILE: MSMg01no209_f10.g1 PHD_FILE: MSMg01no209_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGGAGTACAAATTTCTTACAATTTAATTTCTCAAACCTTTTATA
ATATTACATATTTAATAATTAGCAAAAAGCATTTCTTTTTTCTTCTTTCT
TTTTTTTTTTTAATTTTTTTTTTTAGATTTATTTATTTATATGTAAGTAC
ACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACG
GATGGTTGTGAGCCACCATGTGGTCGCTGGGATTTGAACTCTGGACCTTC
GGAAGAGCAGTCGGGTGCTCTTATCCACTGAGCCATCTCACCAGCCCGTT
TTTTTTTTTTTTTTGTTTCCGGGTCTNTACGCGTAACCCTGGTTGTCCTA
GAACTCACTTTGGAGACCCCACTAGAATCAAATTCAGAATGCCGGCTGGC
TCTGCCTCCTGAGTGTTGGGATTAAAGGCGTGCGTCACCATGCCCAGCAA
GCATTTCATTCCACACTGAAGTCAGAGGTAGACCAGCTCCGTTTAGGCCT
TCTTTACCTAGATTATCACTGCCGATCATGTTGTACTGTGCTGGTATAAG
CTGATATCTTTACGTTCTTTGCGCTTCTTTTGTCCTGTTGGTTGGCACCT
CCTATACTTCTTATGTGGGCCCTGACCCAATGAGAGGTTTTCTTTTCCCT
AATATCTAGTTCATTTCCCGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTTGATTTAGCTGTTCACTTA
GAGGGTGGACACTTTAATATGAGCTTATTGTTTGTTTGTTTGTTTGTTTG
TTTTTTGCTCTAGTTTTGGATGAAACTTTAAATTAACATGTTTGCTCTGG
TGCTTTCTACAGGGGAGAAATCATTTAGAGAGAATAGGTATTGGGAGCTG
GCCTGTCCCAGTTTCTGTAGCAAAGCAGCTCTGTTGTGTGATGCTGGATT
GGGTTTATGGTTAAGGGCAGCTTCTTACTTATATGTGGCTGAGCCTTTAG
GCTGCTCCTATTTTTTTTATCCCGTGCGAGCCCCGGGACTCTAATGTATG
TTAAATCTTTGACAATGGACCCCCCACAAAAGAAACATCTGGTGTCTCAC
CAGATTGCCCATTTGTACTTTGAACTTTCAATTCTCTAAGCCCAGGATCT
CTTTTAGCTAGTAGTTTCCCCTGCTTCCTATATATAATCTTACGAAATTT
TCTAATATTACAGTTGTGCCCAATTTATATATACTTACCGTTAGTTCGCC
CCTCCTGATACCTATTACTTTTATTGTCTCCTTCCCCTTCCTTTTTTCCC
GCCCCCTCCTTTTTTTTGTCCTACCTTCTTTACACCCTTCCTTTTCTCCG
TTTTTTTATTTCCCACTTCCCCACTCTTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_f10.g1 MSMg01no209_f10.g1 CHROMAT_FILE:
MSMg01no209_f10.g1 PHD_FILE: MSMg01no209_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:27 2005
         (243 letters)



>mm_chr7_35050304_35050946
          Length = 643

 Score =  412 bits (213), Expect = e-119
 Identities = 230/243 (94%), Gaps = 12/243 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctttgatttagctgttcacttagagggtggacactttaatatgagcttattgtttgtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 508 agctttgatttagctgttcacttagagggtggacactttaatatgagctta--------- 458

                                                                       
Query: 61  tgtttgtttgtttgttttttgctctagttttggatgaaactttaaattaacatgtttgct 120
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ---ttgtttgtttgttttttgctctagttttggatgaaactttaaattaacatgtttgct 401

                                                                       
Query: 121 ctggtgctttctacaggggagaaatcatttagagagaataggtattgggagctggcctgt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 400 ctggtgctttctacaggggagaaatcttttagagagaataggtattgggagctggcctgt 341

                                                                       
Query: 181 cccagtttctgtagcaaagcagctctgttgtgtgatgctggattgggtttatggttaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cccagtttctgtagcaaagcagctctgttgtgtgatgctggattgggtttatggttaagg 281

              
Query: 241 gca 243
           |||
Sbjct: 280 gca 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)