BAC Information

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BAC

Clone NameMSMg01-209K03
Chromosome7 (Build37)
Map Location 46,831,304 - 46,831,601
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208
Downstream geneLOC100039133, LOC100039050, EG668540, 4930558N11Rik, EG628161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209K03.T7 (MSMg01no209_k03.b1)MSMg01-209K03.TJ (MSMg01no209_k03.g1)
ACCAG392085AG392086
length878711
length of high quality
(start - end)
207 (99 - 305)298 (57 - 354)
definitionCHROMAT_FILE: MSMg01no209_k03.b1 PHD_FILE: MSMg01no209_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:49 2005CHROMAT_FILE: MSMg01no209_k03.g1 PHD_FILE: MSMg01no209_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTCTTTTATTAAATCTCCAATTTTCTCGNNNCCCCCACCCNNCCCCC
TCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTTGTTGCCTCCTAAGATCAAAGGCTTGAAGTTATGGGATA
CTGATTTATAGGATAATCAAACCATGAACCTGGAATAAGAAACTGAATTG
ATATGTAAATACAAAAAGCTGGGTCTTATGTCTACATGAGATGGCCTAGC
AAAAAGCAATAGCAATTCTTTAGATTTTTTTTTTTCTAGTGAGAGCTGAG
GTGTCTTGAGATCTCTGGAGAGAGCACAGCTTCTTTGAGAATTTTTCCTA
ACAGGATTTCTGATTTTAATCTTAAAATCCATGGAGAAGAAACCTTAACT
CCTTTTAAAAATTTTTTCTTTATGTCCCCCCCCCCCCCCTTTTCTAAAAA
AAAATTCTTGGAACCCTTAGTTTGGGAAATCCCCCCCCCCCTAATTTAAA
AAAAAACTAACCCCGGGGTTCTTTTTTAAAAAATATTTTCTAAAGACAGC
TTTTTCCCAAAAAAAGTGGTTGTTCAAAAAAAGCCAATATCCCGGGCTTT
TTTTTTTTAAAAAATTCCCCGAAATTCTGGAAATAAAAAAAAACCCCCCC
CAAATTTTTTAAATGTGGGAAAACTCTACAAAAGGGTCTCTTTTTGGGAA
AAGCTCATCCTTTCCACTCTTAGAAAGCTGCGTTTTTTTTTGTGTGGCAT
AAAATCACGGGTGGGCAACAACCTTTTTCTGGTGAGGTTGAGAACCCCCT
CGGTATAACCACTTCTATAGTTAAATCTTCTCTTCAAAAGCTTATATTTT
TTTTTTCGCAAAATAAAAACAATTTTAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGTTGTGGCCCTAATTTTTAGCGTTTTATTTATCCATTCATCAA
TTACAATAAAATATCTGTTAAACTTTTAAATGTCCCATAGCTTTATAAAT
TAAAACATTTTAAAAAGCCGTTTTTAAAAGTATTGTTTTTAAACTTTCTG
TAAATTTTTAAAGCTTTCTTTAAAGAAGTTTAGAATTGGGTTGGTGAGAT
GGCTCAGTAGGTAAGAGCACTGATTGCTCTTCCAAAGGTCCTGAGTTCAA
ATCCCAGCAACCACATTGTGGCTCACAACCACCCATAATGATCTCTGACA
CCCTCTTCTGGCGGGTCTGAAGACAGCTACAGTGTACTTATGTATAATAA
CACATACATCTTTTTTAAAAAAAGAAGTTTAAAATCTATCAATTGTGTGC
TTTTGCAATATCAAAATAAAATACCATTTTTAAGAGTAAAGGCAGACAGA
GCACAACCATAACTTTTAGAAGGCAAAACTAAGTTTTAACAGTGTAAATA
CAGTGTTTATAAAATCAGTACTAAGTGGGTTACTTTTATGTTACAAAATT
TGGCTGCCAGCAAGAGAGTTCTTCCATATGGTTGCATGGAGGTGTAGCTT
TAATTCCTCCTCCTCCTCCTCTTCCTCATCTTCTCCTTCTTTTTTGGCTT
CCTCCTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_k03.g1 MSMg01no209_k03.g1 CHROMAT_FILE:
MSMg01no209_k03.g1 PHD_FILE: MSMg01no209_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:49 2005
         (298 letters)



>mm_chr7_46831221_46831918
          Length = 698

 Score =  569 bits (294), Expect = e-166
 Identities = 297/298 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgtggccctaatttttagcgttttatttatccattcatcaattacaataaaatatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttgtggccctaatttttagcgttttatttatccattcatcaattacaataaaatatct 322

                                                                       
Query: 61  gttaaacttttaaatgtcccatagctttataaattaaaacattttaaaaagccgttttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaaacttttaaatgtcccatagctttataaattaaaacattttaaaaagccgttttta 262

                                                                       
Query: 121 aaagtattgtttttaaactttctgtaaatttttaaagctttctttaaagaagtttagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtattgtttttaaactttctgtaaatttttaaagctttctttaaagaagtttagaat 202

                                                                       
Query: 181 tgggttggtgagatggctcagtaggtaagagcactgattgctcttccaaaggtcctgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggttggtgagatggctcagtaggtaagagcactgattgctcttccaaaggtcctgagt 142

                                                                     
Query: 241 tcaaatcccagcaaccacattgtggctcacaaccacccataatgatctctgacaccct 298
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 141 tcaaatcccagcaaccacattgtggctcacaaccacccataatgagctctgacaccct 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)