BAC Information

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BAC

Clone NameMSMg01-210I18
Chromosome7 (Build37)
Map Location 71,227,661 - 71,227,763
singlet/doubletsinglet
Overlap genenone
Upstream geneChrna7, Otud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik
Downstream geneTrpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210I18.T7 (MSMg01no210_i18.b1)MSMg01-210I18.TJ (MSMg01no210_i18.g1)
ACCAG392624AG392625
length797927
length of high quality
(start - end)
279 (435 - 713)---
definitionCHROMAT_FILE: MSMg01no210_i18.b1 PHD_FILE: MSMg01no210_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:08 2005CHROMAT_FILE: MSMg01no210_i18.g1 PHD_FILE: MSMg01no210_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATATATTAAANNNTCCNNNNNNGACCNCCAANNCCNNCNNNNNNNNNN
NCGATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAACCGC
GGAATTCTTGCCGTTTACCAACAAAATCGGGCAAAAAGTTAACACCACAC
TGGTGAACTGAGACACCACAGTTTACCCCTGTGACACCACAGTGGAGCAC
TGTGATACCACAGTGGAGAACTGTGACAGCACATTAGAGCACAGTGACAG
CAGAGTGGAGCACCTTGACAGCACAGTGGAGCTCTGTGACACCACGGTAG
AGCACTCTGACCACAATGGAGCATGTGACACCAGAGTGGAGCACAGTGAC
ATCACAGTGGAGCACTCTTACATCTTTTTTTGAACTGTGACAGCACAATT
GAGCATGATGATATTTCTTGTTTCCCNTACGAACCACAGTTGAACCCTGA
GACACCACAGTTGAGGACTGCCATGACAAAAAAAAAAAATTTGAAATCAC
ACTGGAGCTTTGTGACACCACAATGGATTACTGTACACCACGGTTTAGCA
CTGTGATAACACATTGAGCACTGTGAAAACACAGTCTACATAGTCACATT
ACAGTGGTGTATGTGACACCACAGTGGAGCACTGTACACCACAATGAAGC
ACTATGACACCATAGTGGAGCATTGTGACAGCACAAGGAGCACTGTGACA
CCAGAGTGGAGCACAGTGAAATCACAGTGGAGCATGTGATACCTCAGTGA
AGGACTGTGACAACAGAGTGCCACACTCTGACACCACATTGGAGCAT
AGTGTGGTGGGTTTTTTTGNAGAAGATATTAATATATAAAAAAAAGAAGA
TAGGGTAGATTGTGGGTGACTGGCGTCGAATTAGGAGAAATATAGAAGGA
AAGCGGAATAATTTTAAAGAGAGGTGAAAAAATTAACAGGGTAGGAAGAG
GTGGGGGATAGATTCATTTCTAAAGAATAAAGGATGAAAAACAAGGGGGA
ATTTTGGTAGATTGATAAAAAAGAGTTGGGTGGATGAAAAAAAAAAAAAA
AGAAGTGAGAATATATATTAGTAGTATGAGAGATATATTAAATGTAAGAA
AGGAAAGGTATTTGAATAGTAATAGATGGGTGTGTGTTTAATGTTTATGT
GAAGGGTATAGGTTGGAAGGATAATGATGAGAAAAATTATTTTTTTTTTG
AAAAAGGAAATATAAGTAGTGAGAAGAAGGGAGGGTTATTTTTTATTTTT
TCCCCCCCCCCCCCCCTTGAGGGGAGAAAGTAAGAGATATTGGGGTGGGT
GGCCCCCCCCTGTAAAANNNTATTTAAAAAAATGGGGGGTTTAGAAAGGG
GGGAGAAATATAAAAAAAGGAATTGTAGAAAAGGAATAAAAATGATGAAA
AATGGATGAGTAGAATATAAAATGAAATAAAGAAAAATATAAAAGATAAA
ATTTTTGGGGTAATATGTTGGGAATAGTAGATGTTGAGTAAGGTGTAGAT
TAAAAAATTATATGTAAATAGATATTGGATAATAGTAGTGTGATTTGATG
TTTGTTAGAGGATTTATGTATATATAAGAATAATGTTGTATAAATATTTT
AAGGATAAGGAAGTAGGTGATAAAATTCAGTAGTGTATGATGTATATGGG
AGATTTTTATAGGTATAATTTTGGTTATGAGAAACAAATAAGTAAATGAT
GTAGATATAGAGTGGAAATAGTAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_i18.b1 MSMg01no210_i18.b1 CHROMAT_FILE:
MSMg01no210_i18.b1 PHD_FILE: MSMg01no210_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:08 2005
         (279 letters)



>mm_chr7_71227284_71227963
          Length = 680

 Score =  122 bits (63), Expect = 2e-32
 Identities = 93/103 (90%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                       
Query: 178 tgtgacaccacagtggagcactgtacaccacaatgaagcactatgacaccatagtggagc 237
           |||||||||||||||||||||||||||||||| || |||||| |||||||| ||||||||
Sbjct: 480 tgtgacaccacagtggagcactgtacaccacagtgcagcactgtgacaccacagtggagc 421

                                                      
Query: 238 attgtgacagcacaa-ggagcactgtgacaccagagtggagca 279
           | |||||||||| |  ||||||||||||||||| ||| |||||
Sbjct: 420 actgtgacagcatagtggagcactgtgacaccacagtcgagca 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 680
Length adjustment: 9
Effective length of query: 270
Effective length of database: 671
Effective search space:   181170
Effective search space used:   181170
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)