BAC Information

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BAC

Clone NameMSMg01-211J23
Chromosome7 (Build37)
Map Location 5,279,920 - 5,280,236
singlet/doubletsinglet
Overlap geneNlrp2
Upstream geneNcr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150
Downstream geneEG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211J23.T7 (MSMg01no211_j23.b1)MSMg01-211J23.TJ (MSMg01no211_j23.g1)
ACCAG393273AG393274
length737722
length of high quality
(start - end)
321 (45 - 365)180 (454 - 633)
definitionCHROMAT_FILE: MSMg01no211_j23.b1 PHD_FILE: MSMg01no211_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:55 2005CHROMAT_FILE: MSMg01no211_j23.g1 PHD_FILE: MSMg01no211_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTATTTGTGGTACATGGTTTTGATGAGCTGACATTCCCAGCAGGAG
CTCTGATCCGTGACCTTTGTGTTGCCTGGAACACAGTGAAGCCTGTAGAG
GTCTTACTGGGCAGTTTGCTGAAGAGGAAGATGGCACCTCATGCCACCCT
GCTGGTAACCACACGGACACAGTCTTTGCACCAAATCTTTGTCATGATGG
ATCAGCCACTACTAGTAGAAACTCTGGGCTTCTTGGAGCAAGAAAAGCAG
GAGTACTTTCAGAAATACTTTGAAGATGAGGAGGGTGAGGAGGAGGATAA
AGGTGAGGGAAAGGTTCTTATAGCTCTCCCGGACGTGAGATGCAATGCTG
ATCTATACCAAATGGCCTCACTTCCTACTGCATGTGGAATATTCTGCCTC
TGTCTGGAGCTAAGGATGAAGAAGGGGGAAGACCTGTCTCTGACATGTCA
GACATACACCTCTATGTTCCTGAACTTCCTATGCGAAGTCTTCTCATCAG
AAACCTGTGAGGACCATCTCAATGAGGAATTCCAAATCTTATTCAAGAAA
ATATGCATCCTGGCTGCCAATAGTCTCTTGGAACAGGTGCCCATACTCTG
TGAAGAAGACTTCTTGACATTAAAATTGACCCTAAACAATTTGCATCCCA
TGGCGTGCAGGCACATCCTCTTTAAGGACAGTTCCAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGCCAAATTATTTGTTTAGCTCTGTACCCCATTTTTA
ATAGGGTTATTTGATTTTTTTGAGCACATATTCTTGAATTCTTTATATAT
ATTGTATTTTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCC
AATCTGTTGGTGACCTTTTTGTCTTATTGGCAGTGTCTTTTGCCTTACAG
AAGCTTTGTAATTTTATAAGGTCCCATTTTTTGATTCTTGATCTTACAGC
TGTTCTGTTCAGGAATTTTCTTTTTTTTTTCATACATTCGAGGCTTTCCC
CCACTTTCTCTTTTATACTTCCGANCCCNGCCCTTATGTGGAGTTCCTTG
ATACACTTAGACTTGAGCTTTGAAANNGAGNTAAAAATGGGTGGGGGGGG
GTTCTTTGACATGATAACCTCCAGTTGTGTCAGCACCATTTGTTGAAAAT
GCTGTCTTTTTTCCACTAGATGGTTTTAGCTCCCTTGTCATAGATCATGT
GACCATAGGTGTGTGGGTTCATTTCTGTGTCTTCAATTTGAGGATGCGGT
CAAAGAGGAACATCCCTCCATTGGTTGTGGGATTGCAAGTAGGTACAAAT
ACTCTGTTTTTTAATCTGGCAATTCCTCAGATACATTGTGATAGNACTAC
CATAAGATCCAGCAATTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_j23.b1 MSMg01no211_j23.b1 CHROMAT_FILE:
MSMg01no211_j23.b1 PHD_FILE: MSMg01no211_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:55 2005
         (321 letters)



>mm_chr7_5279717_5280437
          Length = 721

 Score =  590 bits (305), Expect = e-173
 Identities = 314/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttatttgtggtacatggttttgatgagctgacattcccagcaggagctctgat 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggaattcttatttgtggtagatggttttgatgagctgacattcccagcaggagctctgat 461

                                                                       
Query: 64  ccgtgacctttgtgttgcctggaacacagtgaagcctgtagaggtcttactgggcagttt 123
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ccgtgacctttgtggtgactggaacacagtgaagcctgtagaggtcttactgggcagttt 401

                                                                       
Query: 124 gctgaagaggaagatggcacctcatgccaccctgctggtaaccacacggacacagtcttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gctgaagaggaagatggcacctcatgccaccctgctggtaaccacacggacacagtcttt 341

                                                                       
Query: 184 gcaccaaatctttgtcatgatggatcagccactactagtagaaactctgggcttcttgga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gcaccaaatctttgtcatgatggatcagccactactagtagaaactctgggcttcttgga 281

                                                                       
Query: 244 gcaagaaaagcaggagtactttcagaaatactttgaagatgaggagggtgaggaggagga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gcaagaaaagcaggagtactttcagaaatactttgaagatgaggagggtgaggaggagga 221

                            
Query: 304 taaaggtgagggaaagg 320
           |||||||||||||||||
Sbjct: 220 taaaggtgagggaaagg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)