BAC Information

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BAC

Clone NameMSMg01-211N05
Chromosome7 (Build37)
Map Location 57,467,115 - 57,467,401
singlet/doubletsinglet
Overlap geneNell1
Upstream gene5330421F07Rik, Dbx1, Htatip2, Prmt3, Slc6a5
Downstream gene4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211N05.T7 (MSMg01no211_n05.b1)MSMg01-211N05.TJ (MSMg01no211_n05.g1)
ACCAG393404AG393405
length717726
length of high quality
(start - end)
320 (45 - 364)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no211_n05.b1 PHD_FILE: MSMg01no211_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:20 2005CHROMAT_FILE: MSMg01no211_n05.g1 PHD_FILE: MSMg01no211_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCAGAATCTCATAGAATGTGACCTTGTACTCCTCTCTCAAAACA
ATGCCATTGAGCACAGTTATGAACCCAGACACTTTGGATTAATCCTTGAT
TCCTTTTTTTTTTCTTTACACCTCCTATTCAGTTGATCAGAAGAATTATT
CACTGAATTGTAGTTCTCAGATGGAGCAGCCTTTCACCAGTTTCACTGTT
AAAGTTCTCTATCACCTATCTATCTGTCTCTCTATCCATCTGTCTATCTA
TCTCTCATCTCTCATCGATCTACCAATTTCTTTCCTATCTATCTATCTAT
CTATCTATCTATTTATCTATCTACCTCCCCATCTATCTATCTATCTACCT
ACCTACCTACCTAATAACCTACCTTTTATCATCTATTTATCTACCTATCT
ATTTTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTT
TGGAGCCCCAGCTACCCTACTGCCCCCCCCCCCATCCCACTCTTCACAAA
GCACTATGTGGTTCCTGTAAAAACTCAGGCCACCAGTCACACCTCTGCCT
AGATTCTTTCAGCACCACGCCTTTACAATACATCAAATATCACCTCCAGG
CTCTTCATGACATATACCTTGTCTTTCTCTTTTACTTCACGGTGTCCTCT
TTGCACCATTTCTCCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGATTTCAGATCCCCCACCC
CCAGTTTAGCACCTCTGACAAAGAGCTAGTTAGCAAGGGGAATGTGATGG
TGGCCTGTGGGTAAAATCAGACTACCTAGAAGCAGCTCCTCTTCTCAGTG
TTTAAATTTGCCTCAGCAAAGGGTTGACACCAAATGCAAATGACTCAATA
GACATTGGGCAATAAAGATAAGCTGTCATGTCAGTGAGAGGAGTTCTTTG
CTGTAGTGTCTCCTGTGACCATGCATCAAACTGTGGGGCTCCTGTAGGTT
ATGCAGGCTAAGTTTTGTTTTCTCGCCCCCCCCCAGTGCTGGCTTGGTGT
TAGAAGACCTGTACTGTTTGACCGGTTTAAGATGAAGGTGCCACGTAGGA
AGGCTATTAAAGGTATCATAGCCTTCAATTTCTTACAGGTGATATGAGCT
GGTTATTTGGCCCCCAGCTCAGTACTTCTTTGTAACACCCACTGCAGAAG
TTCCCCCACATTTTTCCTGGGTGTCTGTTTTCCATTGTCTTGAACCCCCC
GACATGCATTTGTAGGTAGAAATGGAATGCTGTATATCACCCATACTTCT
TATTTAATATACACCCCGACCCTGCGCACCATATATGCCTTTTGAATTTG
GGGCTCCTATACCGGTTACTAAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_n05.g1 MSMg01no211_n05.g1 CHROMAT_FILE:
MSMg01no211_n05.g1 PHD_FILE: MSMg01no211_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:20 2005
         (287 letters)



>mm_chr7_57466915_57467602
          Length = 688

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%), Gaps = 1/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcagatttcagatcccccaccccca-gtttagcacctctgacaaagagctagttagca 59
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 actcagatttcagatcccccacccccaggtttagcacctctgacaaagagctagttagca 260

                                                                       
Query: 60  aggggaatgtgatggtggcctgtgggtaaaatcagactacctagaagcagctcctcttct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggggaatgtgatggtggcctgtgggtaaaatcagactacctagaagcagctcctcttct 320

                                                                       
Query: 120 cagtgtttaaatttgcctcagcaaagggttgacaccaaatgcaaatgactcaatagacat 179
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 cagtgtttaaatttgcctcagcaaagggttggcaccaaatgcaaatgactcaatagacat 380

                                                                       
Query: 180 tgggcaataaagataagctgtcatgtcagtgagaggagttctttgctgtagtgtctcctg 239
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tgggcaatgaagataagctgtcatgtcagtaagaggagttctttgctgtagtgtctcctg 440

                                                          
Query: 240 tgaccatgcatcaaactgtggggctcctgtaggttatgcaggctaag 286
           |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaccatgcagcaaactgtggggctcctgtaggttatgcaggctaag 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)