BAC Information

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BAC

Clone NameMSMg01-212N24
Chromosome7 (Build37)
Map Location 133,682,468 - 133,682,747
singlet/doubletsinglet
Overlap genenone
Upstream geneEG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l
Downstream geneEif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212N24.T7 (MSMg01no212_n24.b1)MSMg01-212N24.TJ (MSMg01no212_n24.g1)
ACCAG394071AG394072
length746747
length of high quality
(start - end)		230 (125 - 354)280 (74 - 353)
definitionCHROMAT_FILE: MSMg01no212_n24.b1 PHD_FILE: MSMg01no212_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:46 2005CHROMAT_FILE: MSMg01no212_n24.g1 PHD_FILE: MSMg01no212_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCATCTGCCTCCGAACTACTAAGAGCTGGCTCCCCGAGCCCATCC
AGCGATGAGCACAGGTTTCCCCTCCTAGAGACCTCCGCTAATTGATCTTT
CTTCTTTTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTCCAGGTATTCC
TACCTAACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTA
TACTTATTTTGTGTACCATATTTTCTCTTTGCTCCTACTCTCTCTCCCCG
CTTTACTTCTGATAGATTGTCCTGAATTTCCTCTAGAATTTTCAGCCCTA
TCTTAATTTTTTTGTTTACCGCCCCCCCCCAACAAAAGGGCTCCTAACAC
TAGAAAAAATTCAAGGCCAAATATAAATAGAAAAGCCATTTTCCACGTTA
CTTCTGATAGACTGTCTTGAATTTCCTTAGAAAGTTCAAGATCAGACTTA
CCTCGTAAAGCTGTACTCACTGGTACTCTCGTTCCCCAGCTGAAAAGTTC
TGAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTT
TATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCCTGCG
CCGGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTCTTATTAG
ACGCGTTCTCACGCCCGGCCAGGAAAGACGCACTAGAACATAATCN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCTGCCTCTTTACAGCCCTCCAAGGA
ACAGTGGGAGGACATGTATTCCCCACAGCCCTTGTTCCTTGTCTTATTTC
CACTGCAGGATCTTAGATGTGTAGCCCAGCCTCTGCCTCCTTCAGCAAAT
CCTACTGGCATGCACCACTACAACCAGCACCACTGCAGGATCTTACGCAC
AGTAAAACACATTTCGACACTGGTGGTGCACGCCTTTAATACCAACATTT
GGAAAGCACAGGCCAGTTGATCTTTGACTTTGAGGCCAGCATGGTCTGCA
GAGTGTTANCTACGTCCCCNAGGCCTNAANCCCAAAGACTGTGTCCCGAA
AAACAAACAAGATAGATTTACGAACAAAAGAAACCTCATTGGTTAGGAGT
GTGTATTGCTTTTCTAGAGGACTTGAGTTTGGCTCTTAGCACTTACATCA
AGTGGTTCACAACTGCCTGTAAAACCAGCTCCAGGGAGACCTAGTGCCTC
TGAACTTCACCTGCCATTTCCACCCATATACACAGAGTTAAAAGCAAACA
TTTTTAAAAGTTTATTTATGTGTATGATTGCTTTGCTTATGTGAGTGCAA
GGGCACTGTGTTTGTGCTTGATACCCACAGAGGCTACAAGAGGGTGTTGA
ATTCCCTGGAATTACAGGCTGTTAACAGTTACAGCGGTTTTGAAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_n24.g1 MSMg01no212_n24.g1 CHROMAT_FILE:
MSMg01no212_n24.g1 PHD_FILE: MSMg01no212_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:46 2005
         (280 letters)



>mm_chr7_133682443_133683122
          Length = 680

 Score =  507 bits (262), Expect = e-148
 Identities = 276/282 (97%), Gaps = 4/282 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgcctctttacagccctccaaggaacagtgggaggacatgtat--tccccacagccc 58
           ||||||||||||||||||||||||||||||||||||||||||| ||  |  |||||||||
Sbjct: 305 acctgcctctttacagccctccaaggaacagtgggaggacatggatcat--ccacagccc 248

                                                                       
Query: 59  ttgttccttgtcttatttccactgcaggatcttagatgtgtagcccagcctctgcctcct 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttgttccttgtcttatttccactgcaggatcttagatgtgtagcccagcctctgcctcct 188

                                                                       
Query: 119 tcagcaaatcctactggcatgcaccactacaaccagcaccactgcaggatcttacgcaca 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tcagcaaatcctactggcatgcaccactacaaccagcaccactgcaggatcttacgcaca 128

                                                                       
Query: 179 gtaaaacacatttcgacactggtggtgcacgcctttaataccaacatttggaaagcacag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 127 gtaaaacacatttcgacactggtggtgcacgcctttaataccaacatttggaaagcagag 68

                                                     
Query: 239 gccagttgatctttgactttgaggccagcatggtctgcagag 280
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  gccagttgatctttgactttgaggccagcatggtctgcagag 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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