BAC Information

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BAC

Clone NameMSMg01-213G04
Chromosome7 (Build37)
Map Location 105,589,104 - 105,614,050
singlet/doubletdoublet
Overlap geneGucy2d, LOC100040721
Upstream geneKctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269
Downstream geneEG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213G04.T7 (MSMg01no213_g04.b1)MSMg01-213G04.TJ (MSMg01no213_g04.g1)
ACCAG394394AG394395
length765779
length of high quality
(start - end)
341 (30 - 370)242 (63 - 304)
definitionCHROMAT_FILE: MSMg01no213_g04.b1 PHD_FILE: MSMg01no213_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:23 2005CHROMAT_FILE: MSMg01no213_g04.g1 PHD_FILE: MSMg01no213_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,589,104 - 105,589,421)(105,613,809 - 105,614,050)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCATCCTTCT
CCCCTGCGCTGATGTCACTCTCTCTGGCTTGGTGCCTTTGTGCAGACAAA
AGCTTCCTTCTCTGTCTGTGAGCTCCAGGGCGCTGATAGGGAACCTTCAA
CTCCATGTGTATGGCCGCATAACCAAGTAACCTGTGGCAAACCCAAAGGC
CATTACCAAATCCAAGAAATACAATCCCCTCTCCACTTCAGGGTTGCCCA
TTAACCTACTGGGCCCAGTGCAGAGAGACCAGAGGAGCCTACACCCTTTG
AAGCAATATGTGGAGGTAAATATGGCTAATCTCAGAGACGGAGATCTATT
TTTTTGTTCTACCCCCCCCTCGCCACATCAGTGAAAATGGACATTTAGAG
ACTTCCCCACCCCAAACTGAACTCTCTGAGGTTGGTGAAACCAGGTCTCA
GATAGGGGTCCAGACCCTGTGCTACAAATCAGGGCAGAGCTGTGGTAAAA
GGAGGTCCCTGCTAAAGTCTGTGCACCTCTGTAGGCCATTGGCTGCAGGA
CTCTTGTGGCATTCTGACCAGCAAGTACTTTATGTAAGGAGTTCCAAGTA
TGTTTTGCATGAACAGCGGCAAATATAACCCTCTTCCTCTGAGTTTTCAA
TGTCCCCCAACTGGTACTCAAAAGGTGTCAACTTAAAACTCCCGCAACCT
TTTAAAAGCTCTGAAATCACCCCTATGAAGGTATACGAATAAACCGTTTA
CTATCCCTCACCATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCTATTTTTGTAATTCATAAAAAAGCAATGGGTTGAG
ACGGGGATCGCTGCTGCCAGTCTCTCGTTTTCATCGTAGACACTTCTTTT
GCAAAGGTGGTCAACGTACCTAAAACCCAAAGGACTTTCTGTAAGAAATG
TGGCAAACAACAGCCTCACAAAGTGGCCCAGTATTAGAAGGGCAAGGCTT
CCCTGTATGCCCAAGGAAAGCGGAGCTAGGATCGGAAGCAGAGTGGCTAC
AGTGGGCAGATATAGCCAATCTTTCGAAAGAAGGCCAAAACCACAGAGAA
TATTTTTTTCAGACTCCCCCGCCGCGAGTCCAACTACAGATCCAAGAGGA
TGCTTGGCCCCCCCCAGAAGCAAGAATTTTGAACTGGAAGGCAACGAGAA
TAGATAGAGCCAAGTGATCCAGTTCTAAAACTTGTGATCTCTGAAAGGAA
AGTACTTGAAGGGGTAAAAAAAATGACCTGCTAGAGAATAAAGTTATTGG
TTATGGATTTTTTTTAAATAAAGGGGAACAGTAGATATTTACTTGTTTAC
ATGAATCTCCAGTGCATTCTATAGGATAGTATTAAAATGGGTGGCCTTCC
CACCCAGGCTTCCTTTGGCCCCCTCCTAAGAAATTCCTCTCTGGTAACTT
TGGCTTTCCCTAAAACCTTGATATTTAAAATAAACCTCCTTGGTACCACT
AAATTCCCTTTTGGAGGTCCCCGAAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_g04.b1 MSMg01no213_g04.b1 CHROMAT_FILE:
MSMg01no213_g04.b1 PHD_FILE: MSMg01no213_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:23 2005
         (341 letters)



>mm_chr7_105588900_105589640
          Length = 741

 Score =  592 bits (306), Expect = e-173
 Identities = 315/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccatccttctcccctgcgctgatgtcactctctctggcttggtgcctttgtgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatccttctcccctgcgctgatgtcactctctctggcttggtgcctttgtgc 264

                                                                       
Query: 65  agacaaaagcttccttctctgtctgtgagctccagggcgctgatagggaaccttcaactc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacaaaagcttccttctctgtctgtgagctccagggcgctgatagggaaccttcaactc 324

                                                                       
Query: 125 catgtgtatggccgcataaccaagtaacctgtggcaaacccaaaggccattaccaaatcc 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catgtgtatggcctcataaccaagtaacctgtggcaaacccaaaggccattaccaaatcc 384

                                                                       
Query: 185 aagaaatacaatcccctctccacttcagggttgcccattaacctactgggcccagtgcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaaatacaatcccctctccacttcagggttgcccattaacctactgggcccagtgcag 444

                                                                       
Query: 245 agagaccagaggagcctacaccctttgaagcaatatgtggaggtaaatatggctaatctc 304
           ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 agagaccagaggagcttacaccctttgaagcaataggtggaggtaaatatggctaatctc 504

                             
Query: 305 agagacggagatctattt 322
           ||||||||||||||||||
Sbjct: 505 agagacggagatctattt 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no213_g04.g1 MSMg01no213_g04.g1 CHROMAT_FILE:
MSMg01no213_g04.g1 PHD_FILE: MSMg01no213_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:24 2005
         (242 letters)



>mm_chr7_105613609_105614250
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctatttttgtaattcataaaaaagcaatgggttgagacggggatcgctgctgccagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcctatttttgtaattcataaaaaagcaatgggttgagacggggatcgctgctgccagtc 383

                                                                       
Query: 61  tctcgttttcatcgtagacacttcttttgcaaaggtggtcaacgtacctaaaacccaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tctcgttttcatcgtagacacttcttttgcaaaggtggtcaacgtacctaaaacccaaag 323

                                                                       
Query: 121 gactttctgtaagaaatgtggcaaacaacagcctcacaaagtggcccagtattagaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gactttctgtaagaaatgtggcaaacaacagcctcacaaagtggcccagtattagaaggg 263

                                                                       
Query: 181 caaggcttccctgtatgcccaaggaaagcggagctaggatcggaagcagagtggctacag 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 262 caaggcttccctgtatgcccaaggaaagcggagctaggatgggaagcagagtggctacag 203

             
Query: 241 tg 242
           ||
Sbjct: 202 tg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)