BAC Information

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BAC

Clone NameMSMg01-214G05
Chromosome7 (Build37)
Map Location 122,776,722 - 122,777,013
singlet/doubletsinglet
Overlap geneSox6
Upstream geneCalca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214G05.T7 (MSMg01no214_g05.b1)MSMg01-214G05.TJ (MSMg01no214_g05.g1)
ACCAG395054AG395055
length738724
length of high quality
(start - end)
433 (45 - 477)292 (58 - 349)
definitionCHROMAT_FILE: MSMg01no214_g05.b1 PHD_FILE: MSMg01no214_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:41 2005CHROMAT_FILE: MSMg01no214_g05.g1 PHD_FILE: MSMg01no214_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAGACATTCGCGCATGGATCTGGAGGATATCATCCTAAGTGATGT
AACCCAATCACAAAAGAACACACATCCATATGCACTCACCGATAAGTGGA
TATTAGCCCAGAAGCTCAGAGTACCCAAGATATAATTTGCAAAACACATG
AAACTCAAGAAGAAGGGAGACCAAAGTGTGGATACTTCCCTCCTTCTTAG
AAGGGGGAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTCGGAG
CAGAGACTGAAGGAACGACCATCCAGAGACTGCCCCACCTGGGGACCCAA
CCCATAAACAACCATCCAAACCAGACACTATTGTGGATTCCAGCAAGAGC
TTGCTGACAGGAGCCTGATATACCTGTCTCCTGAAAGGCTCTGCCAGCTC
CTGACAAATACAGAAGTGAATGCTCACAGCCATCCATTGGACGGAGCACA
GGATCTCCAATGAAGGAGCTAGAGAAAGGACCCAAGGAGTTGAAGGGGTT
TGTAGCCCCATAGGAGGAACAACAATATGAACTAACCAGTACCCCCAGAG
CTCCCTGTGACTAAACCGCCAATCAAAGAAAACAAATGGTGAGACTCATG
GCTCTAGCTGCATATGTAGCAGAGGATGGTCTAGTCGGTCATCAATGGGA
GGAGAGACCCCTGGGCCCTGTTGATGCTCCTTAGGCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCATAATGACTAGACTAGATTACATTCCCACCATCTAATGGATA
AGGTTTTCTTTTTCCCTGGGTCCTCACTAGTACTTATTCCTACTAGGGTG
ATAAAGAGTCATAGAACATTTTTGATTTATATATCCTTGATGATTAAAGA
TGTTGAAAACTTTCATGATAGATTGACTTAAAAAAAAAGAAACTTTTTGA
GGACCATTCAATTCATTTTCCCCTTCCTGTATTTGGTAATTGTTCTTTTG
ACATTTAATTTTTAAAGTCTTTTATATCTATCATTTATACTTATCTCTGT
TCTTACTCCCCCCCCGCAATGACCTTCCTCCATCCTGTATGGTATCTCTT
CACCTTGGCTGATGCATTCCTCTGTGGAATATAAGGTTTTTAATTTGAGG
CAATCCCTTTTTGTTGTTTCTTGTTATTATTCCATTAGCTATTTAGAAAA
TTATTGCCTGTGCCTGCATCTTGAAAATTTTCCTCCTGAATTCCACATTT
TTGGGTATTGCCTTCCTACCTTTTTATCCATTTTTACATGAGTTTTGTGC
AGGGAAAGAGTTAGGAATGCTCTTTCAGTCATTTATATAGGAACATCTTA
CTTTGTCATGCCCCATTATCGAAACAGACTTATATTTCCCTTCAATTGGT
TGGTTTCTGCCATTCATTCGCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_g05.g1 MSMg01no214_g05.g1 CHROMAT_FILE:
MSMg01no214_g05.g1 PHD_FILE: MSMg01no214_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:41 2005
         (292 letters)



>mm_chr7_122776522_122777213
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataatgactagactagattacattcccaccatctaatggataaggttttctttttccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataatgactagactagattacattcccaccatctaatggataaggttttctttttccct 260

                                                                       
Query: 61  gggtcctcactagtacttattcctactagggtgataaagagtcatagaacatttttgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtcctcactagtacttattcctactagggtgataaagagtcatagaacatttttgatt 320

                                                                       
Query: 121 tatatatccttgatgattaaagatgttgaaaactttcatgatagattgacttaaaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatatccttgatgattaaagatgttgaaaactttcatgatagattgacttaaaaaaaa 380

                                                                       
Query: 181 agaaactttttgaggaccattcaattcattttccccttcctgtatttggtaattgttctt 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaactttttgaggaccattcaattcattttccccttcctgtatttggtaattgttctt 440

                                                               
Query: 241 ttgacatttaatttttaaagtcttttatatctatcatttatacttatctctg 292
           |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 ttgacatttaatttttaaagtcttttatatctatcatttatatttatctctg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)