BAC Information

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BAC

Clone NameMSMg01-214P17
Chromosome7 (Build37)
Map Location 28,484,005 - 28,484,290
singlet/doubletsinglet
Overlap geneC030039L03Rik
Upstream geneLOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10
Downstream geneZfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214P17.T7 (MSMg01no214_p17.b1)MSMg01-214P17.TJ (MSMg01no214_p17.g1)
ACCAG395404AG395405
length747749
length of high quality
(start - end)
703 (45 - 747)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no214_p17.b1 PHD_FILE: MSMg01no214_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:29 2005CHROMAT_FILE: MSMg01no214_p17.g1 PHD_FILE: MSMg01no214_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTATGGGCACAAATTTAAAAAGAGGTAAAAATCTGTCATGGTGGT
GGGGACGGTGGTGGTACACACCTGTAAGCCCAGCTAAAAGTGGCCTGTGG
TAGAAGCATCATGATTTCCAAGCCAGCTTGGACTAGATTAGGAGATTCAC
CATCAGAAAAACAAAACAAGCTAAAAAGAAACTAGAACCGCAACAGAATT
CATTAGAATTTTAAGAAGACTTAAAAACCAGGTGGGCTGGCGTAGATCTT
TACCTACCCCTCCTCTCCTCCGAACACAATCCCCAGGTTCATCCCAGCTC
TGCAGCAGATTGTTTGCTTACCCTCCCTTCACCCACTGGTGTAGGTCTAA
CCAAGCAAGGAAAAGACTTGTATGACAAGAACGTCAAGTCTCTGAAGAAA
GAAATTGAAGAAGATCTCAGAAGATGGAAGGATCTCCCATCTCTTGGATC
AGTAGGATTAACATAGTAAAATGGCCATCTTATCAAAAGCAATCTACAGA
TTCAATGCAATTCCCATCAGAATTCCAACACAATTCTTTACAGACCTTGA
AAGAAAAATCCTCAACTTCATACGGAAAAACAAAAAACAGAACAAAACAA
AACAAAAAAATCTCAGGGTAGCTAAAACAATCCAGTACAATAAAAGAACT
GCTGGAGGTATCATCATTCCTGATTTCAAGCTATATTACAGAGCAAT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGTCCTCAAAGATGGTTCTCACC
TTCCCGAGGAACCATCACACTTCCTCGGCCCTGGAGTCAGAGGCAAGTCA
GGGACAGGGTGGTCTTTCCTAGTCCTTTTACCCTACGTCTCCCCCGTTTT
TATTACTAAAATAATCAGGGAGATACAGGGTGGTGTTATCATTAGACTAC
TTCTTGTTGAATAGGGGTGTTGAAGTCCTTGGGGCAAGGTTGAGCTTCAC
CATGAGGGTAGAATTGGGAGTGTTGGGGCTCTGGCGTCATAGGTAGGAGC
CAGTGACCCTTTTTTTTCTCCCGCCCCCCCGCTTATAAAATGTTTTGCAT
CTGTTGTTGAAGAAATCTAGACAAGAAGTTCATGAGACAGTGTGTGGTTA
GTACGATTAAAAAAAGGAAGAGAGGGCCTGGAGAGATGGCTCAGTGGTTA
AGAACCTCTTTTAGAGGACCTGAGTTCAATTCCCAGCAACCACATGGTGA
CTCACAACCATCTGTAATGGGATCTGAAGCCCTCTTCTGCTGTGTCTGAA
GATAACAGTGATAGTGTATTTCATATACATAAAATAAATCTTAAAAAAGA
AGAATGATAGAAAGACAGAAAGAGAGAGAGAGAGAGAGAGAGTGAGAATG
ATCGAACGAAAGATAGTAAGAATGATAGAAAGAGAAAGATAAGGATGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_p17.g1 MSMg01no214_p17.g1 CHROMAT_FILE:
MSMg01no214_p17.g1 PHD_FILE: MSMg01no214_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:29 2005
         (285 letters)



>mm_chr7_28483805_28484488
          Length = 684

 Score =  462 bits (239), Expect = e-135
 Identities = 275/289 (95%), Gaps = 7/289 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtcctcaaagatggttctcaccttcccgaggaaccatcacacttcctcggccctgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 201 tgtgtcctcaaagatggttctcaccttcccgaggaaccatcacactt-cttggccctgga 259

                                                                       
Query: 61  gtcagaggcaagtcagggacagggtggtctttcctagtccttttaccctacgtctccccc 120
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 260 gtcagaggcaagtcagggacagggtggtctttcctagtcctttaaccctacgtctctccc 319

                                                                       
Query: 121 gtttttattacta--aaataatcagggagatacagggtggtgttatcattagactacttc 178
           |||||||||||||  ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 gtttttattactaataaacaatcagggagatagagggtggtgttatcattagactacttc 379

                                                                       
Query: 179 ttgttgaataggggtgttgaagtccttggggcaaggttgagcttcaccatgagggtagaa 238
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 380 ttgttgaacaggggtgttgaagtccttggggcaaggttgagcttcaccgtgagggtagaa 439

                                                            
Query: 239 ttgggagtgttg--gggctctggcgtcataggtaggagccagtgaccct 285
           |||||||||  |  |||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgggagtg--gcagggctctggcgtcataggtaggagccagtgaccct 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)