BAC Information

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BAC

Clone NameMSMg01-217B01
Chromosome7 (Build37)
Map Location 76,205,659 - 76,330,843
singlet/doubletdoublet
Overlap genenone
Upstream geneIgf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneLOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217B01.T7 (MSMg01no217_b01.b1)MSMg01-217B01.TJ (MSMg01no217_b01.g1)
ACCAG396720AG396721
length795708
length of high quality
(start - end)
262 (47 - 308)281 (79 - 359)
definitionCHROMAT_FILE: MSMg01no217_b01.b1 PHD_FILE: MSMg01no217_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:22 2005CHROMAT_FILE: MSMg01no217_b01.g1 PHD_FILE: MSMg01no217_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,205,659 - 76,205,917)(76,330,566 - 76,330,843)
sequence
TCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTGGATGGAATATATTTGCAAATATATGTGCATAGTTTTAGAA
GATTATCTGTTTAAATACATAGAAGCACATACAGCCACCACTACTAATTG
TAATGATTAAATAAAGCAATATATTATAACTTGTTTGAGTAACCAGCTTA
AGAGAGGGATTAAATAATTGCCTTCTAGATTTGCATAGCTATAACCCACT
AAAGTGGATCAGGAAGCTCAGGGTAGGAGTGGTCCAAATCGGTATCTCAT
AGCCTTTTAAGGAGGATGGACTTGATTTATCTAGTACAGCTCCAGAACAG
ATAACCCACATGTTTAAATAGGCCTCCCAATGCGGGGCCCCTTAATTTAA
TATGATAAAAAAGTGTTTGTTTTTTTTGCCCAAAAAAATCATAAAAAAAT
CTTCGTCGGCGGCGGGGGTCTCAACGGTCCTTGCTTCGTATCCTATCTTG
CGTTACGCCACGTTTTCTTTTCCCCTTCCCCTTTCTTTCATGGCTTTATA
CCAAATCTTCCCCCTTTTTTGGATTGTTTTCATCCTTTTCTTCTTACACC
TTTCGTATTATATTCTTTTACCCCTCCTATCTTTTTATACCATTCTTATC
CCTCTTTTTTCACTTCCCCCCTTCCCATATCCTTTTTCCTCCCTTCCATT
AAGTATGACTACCGTCGAATTTCCTTTTTTCCTTACCCCCCCTTTTTTCT
CTTTCTTCTTCCCTCCCCCTTCTTTTTTTCTATCCCTTCCCTAGA
CCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAACTTGTCACTCTCCCAT
TTTTAAATGGAGAATTTTGAGTTAATACCGTTTCTATGCTTGGCACCACT
CTTGGAAGCTAGTTCCATACAACTCAATAAGGTGTACATGAAGAGCAATC
AAATGAAGCAAGCACAGTTAATCCTTACTGTGCAAAGCTTTGTCTTTTTC
TTTGAATCTAATTTGTTGAACGTGTTGCAAGAAGAGTCGAGAGAATGTGT
TTCAGTGTGCCATTGCTAGGTGTCTGATTATAGTACAAACCAAAGTACTG
ATGCAGCTTCCCGTCTGTTTTTTTGCTCCCCCCCCCCCCCAGCATTTTGT
GTGTGGCCTGGTGGGCGACTACCTCCACATGACTACAAATGAAGTTCTTA
ATACATAGCGATATTTGTATGCATGTGCACGTGTGTATATGTGTGTTCAT
GCATACATGTGGATGCATGTACATGCACACTTGTATCATTATGTAAGGTT
TGAGGTCAGAGATCTGATTTATGGAATTCCTTTATCATGTCCTTCTCATA
GGAGCTCTTTGCATTTAATGTGTGTTAGTACGTTGGTACAGTTAGCACTT
TTACCCTATGTATTATTTCCCAGGCTCATGATTTTTTTGCCTTTTGGCAA
TATTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_b01.b1 MSMg01no217_b01.b1 CHROMAT_FILE:
MSMg01no217_b01.b1 PHD_FILE: MSMg01no217_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:22 2005
         (262 letters)



>mm_chr7_76205456_76206117
          Length = 662

 Score =  470 bits (243), Expect = e-137
 Identities = 255/259 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtggatggaatatatttgcaaatatatgtgcatagttttagaagattatctg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtggatggaatatatttgcaaatatatgtgcatagttttagaagattatctg 263

                                                                       
Query: 64  tttaaatacatagaagcacatacagccaccactactaattgtaatgattaaataaagcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttaaatacatagaagcacatacagccaccactactaattgtaatgattaaataaagcaa 323

                                                                       
Query: 124 tatattataacttgtttgagtaaccagcttaagagagggattaaataattgccttctaga 183
           |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 324 tatattataacttgtttgagtaaccagcttgagaaagggattaaataattgccttctaga 383

                                                                       
Query: 184 tttgcatagctataacccactaaagtggatcaggaagctcagggtaggagtggtccaaat 243
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttgcatagctagaacccactaaagtggatcaggaagctcagggtaggagtggtccaaat 443

                              
Query: 244 cggtatctcatagcctttt 262
           ||| |||||||||||||||
Sbjct: 444 cggcatctcatagcctttt 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no217_b01.g1 MSMg01no217_b01.g1 CHROMAT_FILE:
MSMg01no217_b01.g1 PHD_FILE: MSMg01no217_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:22 2005
         (281 letters)



>mm_chr7_76330366_76331046
          Length = 681

 Score =  476 bits (246), Expect = e-139
 Identities = 270/278 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaaacttgtcactctcccatttttaaatggagaattttgagttaataccgtttctatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 478 aagaaacttgtcactctcccatttttaaatggagaattttgagttaatattgtttctatg 419

                                                                       
Query: 61  cttggcaccactcttggaagctagttccatacaactcaataaggtgtacatgaagagcaa 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cttggcaccactctcggaagctagttccatacaactcaataaggtgtacatgaagagcaa 359

                                                                       
Query: 121 tcaaatgaagcaagcacagttaatccttactgtgcaaagctttgtctttttctttgaatc 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 358 tcaaatgaagcaagcacagttaatccttactgtgcaaaactttgtctttttctttgaatc 299

                                                                       
Query: 181 taatttgttgaacgtgttgcaagaagagtcgagagaatgtgtttcagtgtgccattgcta 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 taatttattgaacgtgttgcaagaagagtcgagagaatgtgtttcagtgtgccattgcta 239

                                                 
Query: 241 ggtgtctgattatagtacaaaccaaagtactgatgcag 278
           |||||||||  | |||||||||||||||||||||||||
Sbjct: 238 ggtgtctgagaagagtacaaaccaaagtactgatgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)