BAC Information

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BAC

Clone NameMSMg01-218A11
Chromosome7 (Build37)
Map Location 140,373,047 - 140,422,906
singlet/doubletdoublet
Overlap genenone
Upstream gene4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
Downstream geneLOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12, A130023I24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218A11.T7 (MSMg01no218_a11.b1)MSMg01-218A11.TJ (MSMg01no218_a11.g1)
ACCAG397349AG397350
length782763
length of high quality
(start - end)		334 (44 - 377)308 (388 - 695)
definitionCHROMAT_FILE: MSMg01no218_a11.b1 PHD_FILE: MSMg01no218_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:55 2005CHROMAT_FILE: MSMg01no218_a11.g1 PHD_FILE: MSMg01no218_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,422,577 - 140,422,906)(140,373,047 - 140,373,354)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTGCAGGATGCACTTCCATTGCTTACAGCCTACCTTGTTCACCCCT
GCTCCCTTCTTAGCCCAGGGTCCTCAGAGGCATCTGGGGAGCCCGGTGTC
TGGGAGCTATGGTGCTAACCTCCTCCAAGACAGCCTCATGCCCATGGCCC
AGTGCCCATGAGCATGTGAACAGCACTCAGATGGCCACCTACTACCGGCC
AAACTTGTCCCATCACTGCCTGCTTACATGTGGCTGGCAAGTGCCACTCA
AGCTGCTTCACGGACTAGAATGACCATCCCACCTTGTGGCCAGCTCAGGG
ACTGCCTGACCCTCATCTCTTTCCCCTCTTCCCAGTGTTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCCCTTTCTCTCTCTACCTCTCTCTCTCTC
TCTTCCTGTCTCCTGCTGCATCACAGCTATATCCATAGCGCCCTCTCATC
CATCTTGATATTCCTACTTCTGCATCCTTTGAAGATACTTTCCCCAACTC
TGACCCGCCTGTATTCTCTTCTTTCTTTTCAACGCTTTGATTTCAAAGCT
ATCCTCCCACTTCTCCATCTTTCATTTGTTATTTCCCCCGTCCCTAATTA
GATTCTTTTATGTTCACCGCAAACTACACCTTCCCTTCTTGTCTAGTTTT
TTTTACTGGTTAAACAGCTACCCGCTTCACTT

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCGACAGAGGATTCTTGAATGACCAAG
AAACACCAAAAGAAATGTTCTTCATCCCTAGTCACCAGGGAACTGCAAAT
CAAAATGACTCTGAGATTCCTCTGAGATTGCATCAGAATGGCTAAGATCA
AAAACTCAAGTGATAGCACATGCTGGTGAGGACGTGGAGCAAGGGGAAAA
CCCTCTATTGCTGGTGGGAGTGCAAACTCATACAACCACTTTGGAAATCA
ATCTGGCTGTATCTCGGAAAAATTGGAAACAATTCTACCTCAAGACGCAG
CTATTCTGCTCCTGGGTCTTATTCCCACCCCACGCACTGCCATACAAGGA
CACTTGCTCAACTGTTCATAGAAACAATATCCAGAAACTGAAAAAAACCA
AATGTCCTTCGACTGAAGAATGGATACAAAACTGTGGTACATTTATACAG
TGGAATATTACTCAGCTATTAAAAACAAAGACATCATGACATTTTGCAGA
GAGGCCTCTTGATTCTTGCTGCCTGACAAGGAGATTGTTACATTTCTGTG
GGGACAGCGCCTCCTGTGAAATGGTGTGGAATGACACCTAAGTTGCTTGG
GGTCCAGGGAGCTCAGGTAGACTGAGGCTGGGCAGGGGAGCACCAAGATT
CTCTGAGGTTCTGAATAAGAATAGACAGCAGAGGGTCTGTTCCATCCATT
TGTCAGAACTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_a11.b1 MSMg01no218_a11.b1 CHROMAT_FILE:
MSMg01no218_a11.b1 PHD_FILE: MSMg01no218_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:55 2005
         (334 letters)



>mm_chr7_140422373_140423106
          Length = 734

 Score =  630 bits (326), Expect = 0.0
 Identities = 329/330 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgcaggatgcacttccattgcttacagcctaccttgttcacccctgctccct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gaattcagtgcaggatgcacttccattgcttacagcctaccttgttcacccctgctccct 475

                                                                       
Query: 65  tcttagcccagggtcctcagaggcatctggggagcccggtgtctgggagctatggtgcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tcttagcccagggtcctcagaggcatctggggagcccggtgtctgggagctatggtgcta 415

                                                                       
Query: 125 acctcctccaagacagcctcatgcccatggcccagtgcccatgagcatgtgaacagcact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 acctcctccaagacagcctcatgcccatggcccagtgcccatgagcatgtgaacagcact 355

                                                                       
Query: 185 cagatggccacctactaccggccaaacttgtcccatcactgcctgcttacatgtggctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cagatggccacctactaccggccaaacttgtcccatcactgcctgcttacatgtggctgg 295

                                                                       
Query: 245 caagtgccactcaagctgcttcacggactagaatgaccatcccaccttgtggccagctca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 caagtgccactcaagctgcttcacggactagaatgaccatcccaccttgtggccagctca 235

                                         
Query: 305 gggactgcctgaccctcatctctttcccct 334
           |||||||||||||||||| |||||||||||
Sbjct: 234 gggactgcctgaccctcagctctttcccct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no218_a11.g1 MSMg01no218_a11.g1 CHROMAT_FILE:
MSMg01no218_a11.g1 PHD_FILE: MSMg01no218_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:55 2005
         (308 letters)



>mm_chr7_140372847_140373554
          Length = 708

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccatacaaggacacttgctcaactgttcatagaaacaatatccagaaactgaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccatacaaggacacttgctcaactgttcatagaaacaatatccagaaactgaaaaaaa 260

                                                                       
Query: 61  ccaaatgtccttcgactgaagaatggatacaaaactgtggtacatttatacagtggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaatgtccttcgactgaagaatggatacaaaactgtggtacatttatacagtggaata 320

                                                                       
Query: 121 ttactcagctattaaaaacaaagacatcatgacattttgcagagaggcctcttgattctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttactcagctattaaaaacaaagacatcatgacattttgcagagaggcctcttgattctt 380

                                                                       
Query: 181 gctgcctgacaaggagattgttacatttctgtggggacagcgcctcctgtgaaatggtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgcctgacaaggagattgttacatttctgtggggacagcgcctcctgtgaaatggtgt 440

                                                                       
Query: 241 ggaatgacacctaagttgcttggggtccagggagctcaggtagactgaggctgggcaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaatgacacctaagttgcttggggtccagggagctcaggtagactgaggctgggcaggg 500

                   
Query: 301 gagcacca 308
           ||||||||
Sbjct: 501 gagcacca 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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