BAC Information

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BAC

Clone NameMSMg01-231A22
Chromosome7 (Build37)
Map Location 76,039,765 - 76,040,389
singlet/doubletsinglet
Overlap genenone
Upstream geneIgf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneLOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231A22.T7 (MSMg01no231_a22.b1)MSMg01-231A22.TJ (MSMg01no231_a22.g1)
ACCAG397995AG397996
length737737
length of high quality
(start - end)
691 (45 - 735)635 (74 - 708)
definitionCHROMAT_FILE: MSMg01no231_a22.b1 PHD_FILE: MSMg01no231_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:15 2005CHROMAT_FILE: MSMg01no231_a22.g1 PHD_FILE: MSMg01no231_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCCTTAGCTAATGGAGTCTAATGGAAAAACTAGGTTTCCTACATT
GATTCAGTCTGCAGCAAGAGAAGGCTTGACTCTTGCTGCGAAGCATATCC
CTCCCAGATTAAAACATCCCATCCTGCAGGGAAGCTCCTGAAACCAGAAA
GTCAACAACTCAAAACAGAAGGAAGTTGCTGAAACTAACCAGACTCTTTA
GTACCTTCCCCCTGTAAGAGTGGACAGTAAAGAGGGCTCAGAGTCGCTCT
CAGACAAGCCCAGTATCTGAAGGAAGCAGAGAGGAACCAAGCTGCAAAGA
AGACGTTTATATAAACCCTGCCTCCTAAGCAGACCACTCAAGTAGCCTGG
AAGGAGCAGAAATCAGCCCAGCTTTTTGGAAAAGGTTCAAACTAACTGAG
CCAGCTAGAAAAGACACTTGCTACCTGTTGAGTTGCCTGAATGTTGTGCA
GTTTGTTCCATGGTCCCATCTTTTGTGAGCTGTCAATCATGCTAGGGTGA
TGCAACTGTCTTTGAGTCATCTCTGTTCCTGTAACTCCTTCACACATATC
CCTGTTGGAAACCCTAATCAAACTCATTGTTCACAAAGCTGGATTTTGAT
AGTGTTTTTACTCTGGCCTGCCATTGGTTCCATATCTGGGGTAAGTAGAT
GTGGCTGCTAAATCTCCTCAGGGGAAAAAAATGTTGC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGAATCTTCTGAGTTTTTCAATATT
TATTTTATCCAATTCTAGGAAATAGTTCAGCTATACCAAATGCTATAGAT
TAAAATATGAAAATACCTATAACTCCTATAAACTGAAATTTCATGTACAG
CTTTTCTCAAAACTATTCTTGGAAAAGGTAATCAAAATTGCTGTTATTTT
CCCATTCCTTTTAATTTGTACTGCATAAAATATATATCTGAAATTAAAAT
ACAATATTGATCTGTGTACATTCAAACTTCAAACATGTGACATCACGTTG
TGTAATATAATGAGTCAAGTGAAAGGCCATATTCCACAGGTCCCCATATT
CCTACTTCTAGATACACATAGTGCAGAGACAGTCTCTCATTTGTAAAAGT
AGAGATGCAATGAAAACCACAGCAGCTTTCATTACTAGAAGGCCAACTTA
CAGATCTGACAACAGGGGACTTGGTAGATACGTGATCCATAAATAAAATA
AGTACAATACACCTGCTAAAATTAGTGAGTATGATGTGCATGAACACTGG
TGAAAAATCAAAGATATGATTTAGGAGGCTCCTGGGAGTCTATGAGGTGA
ACCTAGCTGAGACTCCTATCAGCAAGGGATGTGGAGATTGAAGTGGCCAC
CTCCTGTAGCCAGGTGAGACTTCCAGTAGAGGGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_a22.g1 MSMg01no231_a22.g1 CHROMAT_FILE:
MSMg01no231_a22.g1 PHD_FILE: MSMg01no231_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:15 2005
         (635 letters)



>mm_chr7_76039565_76040599
          Length = 1035

 Score = 1170 bits (605), Expect = 0.0
 Identities = 623/635 (98%), Gaps = 10/635 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaatcttctgagtttttcaatatttattttatccaattctaggaaatagttcagcta 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tttgaatcttctgagtttttcaatatttattttatctaattctaggaaatagttcagcta 260

                                                                       
Query: 61  taccaaatgctatagattaaaatatgaaaatacctataactcctataaactgaaatttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccaaatgctatagattaaaatatgaaaatacctataactcctataaactgaaatttca 320

                                                                       
Query: 121 tgtacagcttttctcaaaactattcttggaaaaggtaatcaaaattgctgttattttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtacagcttttctcaaaactattcttggaaaaggtaatcaaaattgctgttattttccc 380

                                                                       
Query: 181 attccttttaatttgtactgcataaaatatatatctgaaattaaaatacaatattgatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attccttttaatttgtactgcataaaatatatatctgaaattaaaatacaatattgatct 440

                                                                       
Query: 241 gtgtacattcaaacttcaaacatgtgacatcacgttgtgtaatataatgagtcaagtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtacattcaaacttcaaacatgtgacatcacgttgtgtaatataatgagtcaagtgaa 500

                                                                       
Query: 301 aggccatattccacaggtccccatattcctacttctagatacacatagtgcagagacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggccatattccacaggtccccatattcctacttctagatacacatagtgcagagacagt 560

                                                                       
Query: 361 ctctcatttgtaaaagtagagatgcaatgaaaaccacagcagctttcattactagaaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctcatttgtaaaagtagagatgcaatgaaaaccacagcagctttcattactagaaggc 620

                                                                       
Query: 421 caacttacagatctgacaacaggggacttggtagatacgtgatccataaataaaataagt 480
           |||||          ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 caact----------acaacaggggagttggtagatacgtgatccataaataaaataagt 670

                                                                       
Query: 481 acaatacacctgctaaaattagtgagtatgatgtgcatgaacactggtgaaaaatcaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 acaatacacctgctaaaattagtgagtatgatgtgcatgaacactggtgaaaaatcaaag 730

                                                                       
Query: 541 atatgatttaggaggctcctgggagtctatgaggtgaacctagctgagactcctatcagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atatgatttaggaggctcctgggagtctatgaggtgaacctagctgagactcctatcagc 790

                                              
Query: 601 aagggatgtggagattgaagtggccacctcctgta 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 791 aagggatgtggagattgaagtggccacctcctgta 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)