Query= MSMg01no232_a10.b1 MSMg01no232_a10.b1 CHROMAT_FILE:
MSMg01no232_a10.b1 PHD_FILE: MSMg01no232_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:25 2005
(309 letters)
>mm_chr7_135369798_135370506
Length = 709
Score = 553 bits (286), Expect = e-162
Identities = 301/306 (98%)
Strand = Plus / Minus
Query: 4 ggaattccttcatgagctctacagcatggaaattagaaaggaacttttttttttttttcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ggaattccttcatgagctctacagcatggaaattagaaaggaacttttttttttttttcc 344
Query: 64 atgcagctattggctgttaatcaggaagtagaagtgactgggaatttcctgtagtagttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atgcagctattggctgttaatcaggaagtagaagtgactgggaatttcctgtagtagttt 284
Query: 124 acagtgactacactgtagtggccaagtttgtcaaggggcaatattaaaaagcttcctgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 283 acagtgactacactgtagtggccaagtttgtcaaggggcaatattaaaaagcttcttgat 224
Query: 184 gtctggactgtaacatcactctgccagcatgagatgcagcctccacccactctggaccac 243
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 223 gtctggactgtaacatcactctgccagcatgagatgcagcccccacccactctgaaccac 164
Query: 244 agcatctgtgggctgaacctgaggaaatattccaagatttcacttcgaggatgcagcttc 303
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 163 agcatctgtgggctgaacctgagaaaatactccaagatttcacttcgaggatgcagcttc 104
Query: 304 cttctt 309
||||||
Sbjct: 103 cttctt 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_a10.g1 MSMg01no232_a10.g1 CHROMAT_FILE:
MSMg01no232_a10.g1 PHD_FILE: MSMg01no232_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:25 2005
(278 letters)
>mm_chr7_135290070_135290747
Length = 678
Score = 447 bits (231), Expect = e-130
Identities = 267/283 (94%), Gaps = 10/283 (3%)
Strand = Plus / Plus
Query: 1 agacccaagagaagtaagggattgggaggagggctttctattgagtc-aaaagcacacat 59
|||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 201 agacccaagagaagtaagggattgggaggagggctttctacagag-caaaaagcacacat 259
Query: 60 ttgagtgggagtgcaagtttctcatgagagagtagtgtcacctggcattctggagagctt 119
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 260 ttgagtgggagtgcaagtttctcatgagagagtagtgtcacccggcattctggagagctt 319
Query: 120 gtctaactggccaactgcagtagagaaaatcctgcctgtagggtttactccccccttcta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtctaactggccaactgcagtagagaaaatcctgcctgtagggtttactccccccttcta 379
Query: 180 tccttagatgggtctgtcttcagatgcatgatgggaacagttcatcatgtatgctaatga 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 tccttagatgggtctgtcttcagatgcatgatgggaacagttaatcatgtatgctaatga 439
Query: 240 ctctttt----atgccatttaatgaagaaaagttggttatgat 278
| | ||||||||||||||| ||||||||||||||||
Sbjct: 440 cac----ggagatgccatttaatgaaaaaaagttggttatgat 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
