BAC Information

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BAC

Clone NameMSMg01-232K02
Chromosome7 (Build37)
Map Location 123,173,552 - 123,173,835
singlet/doubletsinglet
Overlap geneSox6, 1110006G14Rik
Upstream geneLOC668472, LOC100042779
Downstream geneEG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232K02.T7 (MSMg01no232_k02.b1)MSMg01-232K02.TJ (MSMg01no232_k02.g1)
ACCAG399076AG399077
length714709
length of high quality
(start - end)
325 (50 - 374)284 (81 - 364)
definitionCHROMAT_FILE: MSMg01no232_k02.b1 PHD_FILE: MSMg01no232_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:10 2005CHROMAT_FILE: MSMg01no232_k02.g1 PHD_FILE: MSMg01no232_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACTCCCAGGAGAAATGAGAACATAAGTTCCCATACGTTGT
CCACAGCAGCATTATCTGTGATATCCTAAAGGTGAATATAGTCTGACCCA
GATGTCCACCAGCTGAGTGAAAGAAAAACTGTGATATATGTCTACAATGG
AATATTACCTGGCAATGAAAAGGAACGAAATGTTGATAATGTCACAAGGA
TGAACCTTAAAAGATTTATTTTAAGTGAAGGAAGCTAGTCACAAAAGGTG
ACCCAATATATTACCCTGCTATTATTCAGAGGAGGAGACGTTCGTGAAGA
TAGAAAATAGATTATTTGTTGCCCACACGATGGAGTGGGCATGGTGGTGA
TGGCGGCTAGAAGATTGGATACAGGAGCAAGTGGTGACTGATTTGTGAAC
TGTCTCCATAAAGCTGTCTGTCCTTCATGTTCTTTCCACCCCAGCAGACA
TGCTGGGAAGACCCACACTCACCCTAACAAATGAGTTCCTGATGGTAGAG
TTGCGAAGAGAGTGGCAGACTTCCACACAATTATTTTTTTTGGAAACGTT
GGCTTTTATTAGTTCATCTTCAATAGGATCTACAAGGGGAAACAGGCTTG
CTTTAGCACAAAATTAATTATTAAGCTCTCAGACGAGAGTGTCAGTGGAC
CTAGAAGTGATTTC
NAGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGCGAGTGCCCAGGGTG
GCAGAGGGATGACAGAGGAAAGGTCATGTTTGAAGCTGCACAAGTCTGGT
CTGCACAGGGCCACAAGCCTTAAAGCTGGCCTCAGGCTAGGATGTCCCGG
GAAGCTCAACAGGAAACTAGCATCCATCTGAGCAGACAGGGAGACAAAGC
TCTGCTCTAAGAACCCCAAGCTGAACAGGAATGAGAAGGGAAACAACAGA
TCTGCCCAGCTCCCGGGTCCACTAGCAGTCCCAAGCAACTAGGCCTGAAG
CGGGAGCAGAAACTATAATCAGCCACTGACCCTAAATTATTGTGATAGAC
CTCTGAGAGTGGGGGAAGCAGGAAGACAAGTGAGCAGATCTGAAGTCTCT
TCCCAAGCCAAGTCACACAGTGCCAAGACTGGCTGATCCCAATAGATGAG
TGCACACAGAGTGTTTGAGCAGATTCTCCAGGGCAGCATGTGGGTAGGAT
GTGGCCAGGTTTGTTCTGTTTCCCCTTTCCCCATCCAGTCTGCAACCTGC
CGCTGATGTTGGGTACCTTCTCCTAACCAGCACTTGCCCCTTAGCTGAAA
ACTAAGAAAAACTGGAGAAGGAGAAAAGGCAAAAATCAAAAGCGAGATTT
CATGGTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_k02.g1 MSMg01no232_k02.g1 CHROMAT_FILE:
MSMg01no232_k02.g1 PHD_FILE: MSMg01no232_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:10 2005
         (284 letters)



>mm_chr7_123173352_123174035
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagcgagtgcccagggtggcagagggatgacagaggaaaggtcatgtttgaagctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagcgagtgcccagggtggcagagggatgacagaggaaaggtcatgtttgaagctgca 260

                                                                       
Query: 61  caagtctggtctgcacagggccacaagccttaaagctggcctcaggctaggatgtcccgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagtctggtctgcacagggccacaagccttaaagctggcctcaggctaggatgtcccgg 320

                                                                       
Query: 121 gaagctcaacaggaaactagcatccatctgagcagacagggagacaaagctctgctctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagctcaacaggaaactagcatccatctgagcagacagggagacaaagctctgctctaa 380

                                                                       
Query: 181 gaaccccaagctgaacaggaatgagaagggaaacaacagatctgcccagctcccgggtcc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gaaccccaagctgaacaggaatgagaagggaaacaacagatctgcccagctcccaggtcc 440

                                                       
Query: 241 actagcagtcccaagcaactaggcctgaagcgggagcagaaact 284
           |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 actagcagccccaagcaactaggcctgaagcgggagcagaaact 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)