BAC Information

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BAC

Clone NameMSMg01-232P19
Chromosome7 (Build37)
Map Location 112,040,288 - 112,040,948
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665
Downstream geneOlfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232P19.T7 (MSMg01no232_p19.b1)MSMg01-232P19.TJ (MSMg01no232_p19.g1)
ACCAG399328AG399329
length729734
length of high quality
(start - end)		321 (46 - 366)658 (77 - 734)
definitionCHROMAT_FILE: MSMg01no232_p19.b1 PHD_FILE: MSMg01no232_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:36 2005CHROMAT_FILE: MSMg01no232_p19.g1 PHD_FILE: MSMg01no232_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTCCACGACTTTTATCATGAATGGGTGTTGGATTTTGT
CAAATGCTTTCTCAGCATCTAAGGCCTGTTCATGTGGTTTTTGTCTTTGA
GTTTGTTTATATACTGGATTACGTTGATGGATTTCCATATATTGAACCAT
CCCTGCATCCCTGGGATGAAACCTACTTCATCAGGATGGATGATTATTTT
GATGTGTTCTTGGATTCGGTTAACAAGAACTTTATTGAGTATTTTTACAT
CGATATTCATAAGGGAAATTGGTCTGAAGTACTCTATCTTTGTTGGGTCT
TTTTGTGATTTAGGTATCAGAGTAATTATGGCTTCATAGAATGAGTTGGG
TAGAGTACCTTCTACTTCCACCCCGCGGAATAGTTTGTGCAGAACTGGAA
TTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCGGGT
CCTGGGTTTTTTTTGGTTGGGAGACCATTAATGACTGCTTATATTTCTTT
GGGGGATATGGGACTGTTTAGAGAGTTAACTTGATCCTGGTTTAACTTTA
GCACCTGGTATCTGTCTAGAAATTTGTCCATTTTGTCCAGGTTTTCCAGG
TTTGTTGAGTATGGCCTTTTGTACAAGGATCTGATGCTCTTTTGCATTTC
TTCACCATCTGCCGCTATGTCTCCCTTTT

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTATGAGTAGAAAAGTAAAGAAA
TGATGTATGGAGACTAAATCTTGTTACCGTTTAGAAGACAAACTTGCAGT
AATTTGAGACAACCTGTCTTCTCTGTTAAAGATAAACTCTTACATCAAAT
ATGTTGCTGATGTAGGGAAAAAGGAGGTTTAGTGCTTCAATGTGTATGTA
TGTATGCATATGTATGTAAGGCATTTTTTATATTTTATGGAATATCTCAA
TTATAGTGATTTGTTTGCCTTATAAGTACACTCTATTTTTAAATGTCTGT
TCTTCCTCAAATGTTCAGTTTTTAAGTACCATTAAAACTGGTTTTATGAA
ATGCAATTGTTTTGTTGGTTAACAAGGTTATATCATCAGATTTCTATGGT
ATTTGATATTATTTCACTCATTCTTGATTTAAATACAATTGACTAATACT
ATTAGCTTTATACTGGGTTTAATTTGAGGGACACAGAGTAGAATTTCCAA
AAATGTGTCAAAGGGCAATGAGAATAGACACACTGGTGAAGGAAACATGA
AAAGAAATGTGTATGAAAAACAAGAGGATATGATTAAAAATAGATGCTGT
CTGTAAGACGGACATCTTAGTAGACAATTAATGGAATGCTTTATTGGTCT
TGGATTGAGTTTGTCTGAAGATTAATATGCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_p19.g1 MSMg01no232_p19.g1 CHROMAT_FILE:
MSMg01no232_p19.g1 PHD_FILE: MSMg01no232_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:36 2005
         (658 letters)



>mm_chr7_112040088_112041148
          Length = 1061

 Score = 1232 bits (637), Expect = 0.0
 Identities = 654/661 (98%), Gaps = 3/661 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtatgagtagaaaagtaaagaaatgatgtatggagactaaatcttgttaccgtttagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 861 tgtatgagtagaaaagtaaagaaatgatgtatggagactaaatcttgttagtgtttagaa 802

                                                                       
Query: 61  gacaaacttgcagtaatttgagacaacctgtcttctctgttaaagataaactcttacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gacaaacttgcagtaatttgagacaacctgtcttctctgttaaagataaactcttacatc 742

                                                                       
Query: 121 aaatatgttgctgatgtagggaaaaaggaggtttagtgcttcaatgtgtatgtatgtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaatatgttgctgatgtagggaaaaaggaggtttagtgcttcaatgtgtatgtatgtatg 682

                                                                       
Query: 181 catatgtatgtaaggcattttttatattttatggaatatctcaattatagtgatttgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catatgtatgtaaggcattttttatattttatggaatatctcaattatagtgatttgttt 622

                                                                       
Query: 241 gccttataagtacactctatttttaaatgtctgttcttcctcaaatgttcagtttttaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccttataagtacactctatttttaaatgtctgttcttcctcaaatgttcagtttttaag 562

                                                                       
Query: 301 taccattaaaactggttttatgaaatgcaattgttttgttggttaacaaggttatatcat 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 taccattaaaactggttttatgaaatgcaattgttttgttggttaagaaggttatatcat 502

                                                                       
Query: 361 cagatttctatggtatttgatattatttcactcattcttgatt---taaatacaattgac 417
           |||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 501 cagattcctatggtatttgatattatttcactcattcttgatttactaaatacaattgac 442

                                                                       
Query: 418 taatactattagctttatactgggtttaatttgagggacacagagtagaatttccaaaaa 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatactattagctttatactgggtttaatttgagggacacagagtagaatttccaaaaa 382

                                                                       
Query: 478 tgtgtcaaagggcaatgagaatagacacactggtgaaggaaacatgaaaagaaatgtgta 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtcaaagggcaatgagaatagacacactggtgaaggaaacatgaaaagaaatgtgta 322

                                                                       
Query: 538 tgaaaaacaagaggatatgattaaaaatagatgctgtctgtaagacggacatcttagtag 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaaaacaagaggatatgattaaaaatagatgctgtctgtaagacggacatcttagtag 262

                                                                       
Query: 598 acaattaatggaatgctttattggtcttggattgagtttgtctgaagattaatatgctta 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaattaatggaatgctttattggtcttggattgagtttgtctgaagattaatatgctta 202

            
Query: 658 a 658
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1061
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1051
Effective search space:   681048
Effective search space used:   681048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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