BAC Information

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BAC

Clone NameMSMg01-234A14
Chromosome7 (Build37)
Map Location 79,248,370 - 79,297,753
singlet/doubletdoublet
Overlap geneMctp2, LOC100042873
Upstream geneLOC665535
Downstream geneLOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234A14.T7 (MSMg01no234_a14.b1)MSMg01-234A14.TJ (MSMg01no234_a14.g1)
ACCAG400052AG400053
length731730
length of high quality
(start - end)		684 (46 - 729)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no234_a14.b1 PHD_FILE: MSMg01no234_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:53 2005CHROMAT_FILE: MSMg01no234_a14.g1 PHD_FILE: MSMg01no234_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,248,370 - 79,249,049)(79,297,464 - 79,297,753)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATAAAGGTTGCTTTGTATGTGTCCAGCTGTTTTCCCCTCTCTCC
TCAGGCAGTCTAAAGTATACTTATCGCCTCTTCTATGACAGTGCTGAAGA
TATGCCCCTCAGTGACAGAGGTCACTCTGGAGCACACACAATAAGTTTCC
AGGTACTGTGACTTCTTACACAAACTGTTACAGTGTAATAATCGTGTTCC
CAACACACTGCCGACACCAGGAAAACTTCAACCAAACTTTGGCAACTATG
TCACAAACAAAGCAAGCATCAAAGACATGAGTAGGCAGCTGGATTGCAGA
GGCCTATGTGTCACAGCCGGCAAGCAGGTCTGACATTGTATTATGTGACT
TTTTTATGAGCTTGGAGTACTATATATACTCTTATCTTCCTCAGTGTCCA
CTGTCTAAGAATGTTACCTAAGTTATGTATAGATCTTCCATACATTTTAC
TGTGCTAAGTAGCTATCACACCACTAATATAATTTAATGATTATACAAAT
TATTGCACAAATTGCTACAATCTATTTTTATATTATTCCTTGGCTTATCT
CTTCCCTACTCCTGTCTCTTTGTCTCAGTTCAGCCTACTGTGCTTGCTAT
GTAGAGTAAGAGTCTTTACAACCTTCACAAACGAGTAACAAGAGATTGTT
CCTTGGGTTAGGATGAATCACTCAGTAAGGN

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTGCCCAGTTCCCTTTCCCACTTT
TATAGTTCAATATTCCACCCAGGGAATGGTGCTACCCACAGTGGATAGTT
CTTCCCACTTCAATTAATACAATTAAAATAATCCTCCCAAGGCATACTCA
AGGCCCAACTCCCAGGTGATTTTAGATTCAAGTTGGCAACCCGAAACCTC
ACACTTTGCCTTGCTGCTCGTATTCCTTTACCTTCCTTCTTCCCTGTATT
TGAAAGCAAAAGGTACCATTTTGACTATGACAGTATTTAATGAAAAAGAA
TATTTGAGAACCAACTTGGCTAACAAGCATACAACAATTTTTTAATGAGA
TAAGACATGCATAATGGTACACGTTATTGCAAATGCTAATGGGTATCGAT
GTTCTTGCAAAAGCCTTATTTACAGTTTCATTGTGGACTGTATGTTTTGA
AGTAACAAATGCCAAGATCCATAGTGATCGGTTATTTTTCCACCAGTGAA
ATGAGCCAGTTCAAACCAGATTAGATTATATTAAAGGCAGGTTTATTGGG
AAACCGCTCTCGGGTGAGTTCACTGGTCCCAAGGACCAAGGCCAAGATAT
TTGCCATAGGGGTCAGGGGGGTGGGAGAAGAGGAAGAGTGCACATGCAGA
GAAAGAAGAAAAGAGGTAAATGAGAGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_a14.b1 MSMg01no234_a14.b1 CHROMAT_FILE:
MSMg01no234_a14.b1 PHD_FILE: MSMg01no234_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:53 2005
         (684 letters)



>mm_chr7_79248166_79249249
          Length = 1084

 Score = 1276 bits (660), Expect = 0.0
 Identities = 675/680 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctataaaggttgctttgtatgtgtccagctgttttcccctctctcctcaggcagt 64
           |||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattctataaaggctgttttgtatgtgtccagctgtttccccctctctcctcaggcagt 264

                                                                       
Query: 65  ctaaagtatacttatcgcctcttctatgacagtgctgaagatatgcccctcagtgacaga 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaaagtatacttattgcctcttctatgacagtgctgaagatatgcccctcagtgacaga 324

                                                                       
Query: 125 ggtcactctggagcacacacaataagtttccaggtactgtgacttcttacacaaactgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtcactctggagcacacacaataagtttccaggtactgtgacttcttacacaaactgtt 384

                                                                       
Query: 185 acagtgtaataatcgtgttcccaacacactgccgacaccaggaaaacttcaaccaaactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagtgtaataatcgtgttcccaacacactgccgacaccaggaaaacttcaaccaaactt 444

                                                                       
Query: 245 tggcaactatgtcacaaacaaagcaagcatcaaagacatgagtaggcagctggattgcag 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 tggcaactatgtcacaaacaaagcaagcatcaaagacatgagtaggcagctggattacag 504

                                                                       
Query: 305 aggcctatgtgtcacagccggcaagcaggtctgacattgtattatgtgacttttttatga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggcctatgtgtcacagccggcaagcaggtctgacattgtattatgtgacttttttatga 564

                                                                       
Query: 365 gcttggagtactatatatactcttatcttcctcagtgtccactgtctaagaatgttacct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcttggagtactatatatactcttatcttcctcagtgtccactgtctaagaatgttacct 624

                                                                       
Query: 425 aagttatgtatagatcttccatacattttactgtgctaagtagctatcacaccactaata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagttatgtatagatcttccatacattttactgtgctaagtagctatcacaccactaata 684

                                                                       
Query: 485 taatttaatgattatacaaattattgcacaaattgctacaatctatttttatattattcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taatttaatgattatacaaattattgcacaaattgctacaatctatttttatattattcc 744

                                                                       
Query: 545 ttggcttatctcttccctactcctgtctctttgtctcagttcagcctactgtgcttgcta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttggcttatctcttccctactcctgtctctttgtctcagttcagcctactgtgcttgcta 804

                                                                       
Query: 605 tgtagagtaagagtctttacaaccttcacaaacgagtaacaagagattgttccttgggtt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtagagtaagagtctttacaaccttcacaaacgagtaacaagagattgttccttgggtt 864

                               
Query: 665 aggatgaatcactcagtaag 684
           ||||||||||||||||||||
Sbjct: 865 aggatgaatcactcagtaag 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no234_a14.g1 MSMg01no234_a14.g1 CHROMAT_FILE:
MSMg01no234_a14.g1 PHD_FILE: MSMg01no234_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:53 2005
         (290 letters)



>mm_chr7_79297099_79297788
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtgcccagttccctttcccacttttatagttcaatattccacccagggaatggtgcta 60
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 655 ctgtgcccagttccctttctcacttttatagctcaatattccacccagggaatggtgcta 596

                                                                       
Query: 61  cccacagtggatagttcttcccacttcaattaatacaattaaaataatcctcccaaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cccacagtggatagttcttcccacttcaattaatacaattaaaataatcctcccaaggca 536

                                                                       
Query: 121 tactcaaggcccaactcccaggtgattttagattcaagttggcaacccgaaacctcacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tactcaaggcccaactcccaggtgattttagattcaagttggcaacccgaaacctcacac 476

                                                                       
Query: 181 tttgccttgctgctcgtattcctttaccttccttcttccctgtatttgaaagcaaaaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tttgccttgctgctcgtattcctttaccttccttcttccctgtatttgaaagcaaaaggt 416

                                                             
Query: 241 accattttgactatgacagtatttaatgaaaaagaatatttgagaaccaa 290
           |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 415 accattttgactatgacaatatttaatgaaaaagaatatttgagaaccaa 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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