BAC Information

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BAC

Clone NameMSMg01-235J02
Chromosome7 (Build37)
Map Location 109,603,840 - 109,604,418
singlet/doubletsinglet
Overlap geneRrm1
Upstream genePde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1
Downstream geneOlfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235J02.T7 (MSMg01no235_j02.b1)MSMg01-235J02.TJ (MSMg01no235_j02.g1)
ACCAG401102AG401103
length727827
length of high quality
(start - end)		635 (45 - 679)124 (77 - 200)
definitionCHROMAT_FILE: MSMg01no235_j02.b1 PHD_FILE: MSMg01no235_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:56 2005CHROMAT_FILE: MSMg01no235_j02.g1 PHD_FILE: MSMg01no235_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCAACATAATGAAAATGATATGCTATGCTGTCAACATACCAAG
ATAACAAAATGGAGACTCAGCAATGAATGGATTATAGAATAAGGCTAAGC
AAATAGTGTTATGACTAAAAAATACCTTTCAATTCTTTAAAGAATTTTCT
AAACCCCAAGGTAAATCTTTGAAAGAGTTTGAAAAGATAAGTGGGCTGTG
GCTCACTCTACAAATTCAGATGATTGATAGACAGACAGACAGACAGACAG
TAAACAGAAATACTGTCTCGAAAAACAAACAAAATGGACAGATAGATATA
AATACACAAAATATTACAGATATTACAAACAAAAAAGACACATTGCACAC
CTACATGCCCCAATATATCATAGGACAATTTCCTTGAGAACCTGACTCTA
TTAGGGTTTATGTTTTTTCACATTACACACAAAAATGCTGACGTAACTCC
CTCCAGGCCACACTGCCAGTAGGGAAAAATACAGTATGGAAATCCAAGCC
CTGCACTTTTCATCACCTTGCTTTCCAGTGTCTAGAGCTGGAATCCCAGC
TCTACCATACAGCAAGTGACAGACACAGAAAAAAACTAACTCTGAAGCCT
CACTTTCTTCATGTGAAAAATGAAAACACTGGTGCCTGAATTATTGTAAG
GAACAAAGTTGCTAGCAAGCGACTGGA

CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTACAAAGCCAGACTTAGTGTGC
ACCATTGTGTTTCTCTTATGTGTATGACTGTGTATGTGTTGTGTGGGTGT
GTGCATGCGTGTGCAAGGTGCTTGTGGAGACATTATATCCCTTGAAGCTT
GAGTTATAAGTGGTTGTGAACCACCCTATATGGATTCTCAGCAAGGACAG
TATAGTCTTTTCAAATTTTTTTGTTTTTTGATACACGTGTCACTCTGTAA
CCCTGACTGCTTATAACTCATTTTGTATACCGCCCTGTCCTCCAACTCAT
AAATACACCAATTTTTTTCTCCCCCCCCCCCCCATTAAAGTCTTACTAAC
TTCTAGCCTTTGCTTACCCCCCCCCCCCCTAAAAAAAACAACTTTCCCTT
ATCCAGCCCCCCATTCGCATACTCTCTACACCAACCCACTTACCTCCCTT
ATTCCCTCCCTCTCTCCCCATTTCCTTACCACTCTTTACTACCCTCCCCC
ATTTCTTTTCCTCCTCCTCCCACTCCCACTTTTCTCACTACAATTCTCAC
AATATCACTTTTATAATATTTCCCTTTCCTATCACCCACTCCACACCCTC
CCTCCCTTCGCACCCCTCAACTTCCCTTCAACCACTTCCCTTTATCTCTC
CTTCTCTTATCTTCTTTCTTAACTTCCTCTTTCTTACTTTCCCCCCTTTC
TAATCTATCTCGACTTCTCTACCACCCCTTCAATATTTCCTACCTTCTAA
CCCATCTATTTTCTTTCATCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_j02.b1 MSMg01no235_j02.b1 CHROMAT_FILE:
MSMg01no235_j02.b1 PHD_FILE: MSMg01no235_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:56 2005
         (635 letters)



>mm_chr7_109603384_109604418
          Length = 1035

 Score = 1077 bits (557), Expect = 0.0
 Identities = 572/579 (98%), Gaps = 4/579 (0%)
 Strand = Plus / Minus

                                                                        
Query: 61   caaaatggagactcagcaatgaatggattatagaataaggctaagcaaatagtgttatga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 caaaatggagactcagcaatgaatggattatagaataaggctaagcaaatagtgttatga 976

                                                                        
Query: 121  ctaaaaaatacctttcaattctttaaagaattttctaaaccccaaggtaaatctttgaaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975  ctaaaaaatacctttcaattctttaaagaattttctaaaccccaaggtaaatctttgaaa 916

                                                                        
Query: 181  gagtttgaaaagataagtgggctgtggctcactctacaaattcagatgattgatagacag 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  gagtttgaaaagataagtgggctgtggctcactctacaaattcagatgattgatagacag 856

                                                                        
Query: 241  acagacagacagac----agtaaacagaaatactgtctcgaaaaacaaacaaaatggaca 296
            ||||||||||||||    |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 855  acagacagacagacagatagtaaacagaaatactgtcttgaaaaacaaacaaaatggaca 796

                                                                        
Query: 297  gatagatataaatacacaaaatattacagatattacaaacaaaaaagacacattgcacac 356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  gatagatataaatacacaaaatattacagatattacaaacaaaaaagacacattgcacac 736

                                                                        
Query: 357  ctacatgccccaatatatcataggacaatttccttgagaacctgactctattagggttta 416
            ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 735  ctacacgccccaatatatcataggacaatttccttgagaacctgattctattagggttta 676

                                                                        
Query: 417  tgttttttcacattacacacaaaaatgctgacgtaactccctccaggccacactgccagt 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675  tgttttttcacattacacacaaaaatgctgacgtaactccctccaggccacactgccagt 616

                                                                        
Query: 477  agggaaaaatacagtatggaaatccaagccctgcacttttcatcaccttgctttccagtg 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  agggaaaaatacagtatggaaatccaagccctgcacttttcatcaccttgctttccagtg 556

                                                                        
Query: 537  tctagagctggaatcccagctctaccatacagcaagtgacagacacagaaaaaaactaac 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555  tctagagctggaatcccagctctaccatacagcaagtgacagacacagaaaaaaactaac 496

                                                   
Query: 597  tctgaagcctcactttcttcatgtgaaaaatgaaaacac 635
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 495  tctgaagcctcactttcttcatgtgaaaaatgaaaacac 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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