BAC Information

Click to search

BAC

Clone NameMSMg01-236K18
Chromosome7 (Build37)
Map Location 132,938,427 - 132,939,034
singlet/doubletsinglet
Overlap geneD430042O09Rik
Upstream geneEG545999, LOC670828, 4933440M02Rik, LOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1
Downstream geneGsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236K18.T7 (MSMg01no236_k18.b1)MSMg01-236K18.TJ (MSMg01no236_k18.g1)
ACCAG401859AG401860
length742736
length of high quality
(start - end)
608 (62 - 669)283 (60 - 342)
definitionCHROMAT_FILE: MSMg01no236_k18.b1 PHD_FILE: MSMg01no236_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:17 2005CHROMAT_FILE: MSMg01no236_k18.g1 PHD_FILE: MSMg01no236_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAATA
TTTACATGCCGAGACACTCAAGGCCAAGAAAAGCTCATGAGAAGCGCTCA
CCTTTAGAAGCTCGGTTAAACTCCATTACCACAAGGGTGTCTGTGGCCTG
GGGATGCCGGCCTTCCAGTTCCTGGTCCTTGGGGACATCCTTCTGTACTG
CATCATGGCTGGGAAGTGGACATTCATCTCTGTTGTGGACTGGCAGGACA
GGGTCCTCAGTCTCCGTCTCAGAGAGGACGTCTTCCTCAATAGAGTCGTA
CTCGTCGTTGGATCCGTCCTCTTGGGTCTGGAGGCTTGTGCTGAGCCCCA
TTCCTTTCCTCAGCTCCTGCAGAAAGCCCAGGAGAGGTGAAAGGTGAGGC
CTTGTATGGAACCAAAGAACAGCTCCAGCCAACAACCAGCAGCACCTCAG
CCAGATGCTGGGGCTGCTTTGAGGATGGGAAAGCAAAGGTCAGAGGGCAC
GAACATGAGGGGTGCTGTGAGGAGACACCATGACCATGGCGACTATAAAA
GAAAGCATTTACTTGGGGCTTGCTTACAGTTTCAGGGGCTTGGTCCTTTG
CCACATTAAGTTTATTGCATGTGAATTTAAAGTGAATTTAAAGCCGGACA
ACCCAAACTGACTGATGATGGACACCTGTATATGAAAGCTGCCACTGGCA
TGGGCTCAGGAAACAAGGGATACGTGGCTGGAATAGAAGGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAAGACTAGCCTGATATACACAGTGAGTTTCAGGCTAGCCAG
GATTACCCAATGAGACCATCTCAAAAAGATGGGCCAGAGAGAAAACTCAT
AGGTTAAGAGCACTGGCTCCCAGCACCCACATTGCAGCTAACAACTGTCT
GCAAATCTAATTCTAGACTCCCTCTTTTGGCCTCTGTGGGCAATGTACTC
CATGTGGCTTATAGATAGACATGCTGTCAAAACACTCACATGCAAAAAAA
AAAAAATAAAAAATAAACAAATCTCAGAACAATAAAGCCCAAATTTTTTT
TCTTCCCTCCCCACCTCTACGTTCTCTAGCTCTATGGCACAAGCCTTACT
TAGAAGGTATCTGTAGCCTCAGCATAAAAGGACCCTTTGACAGCTAGTGT
TAAATGTCAACTTTATAGAATCTAGAATCACCTGGCAGACTTCTGAGCAT
GCCCATGAGGGATTATCTTGATTACAGTAATTGAGGTAGGAAGACCTGCC
CACTATGGGTGGCTCCACTCCTTGGCTGGGAGCCATGGAGCAAAGGACCT
AAGCAGCAGGCTCAGCAAGCATTCATTGCTCTGTCTGTCTTTTGACTGCA
GGAACTATGTGCTTCAAGCTCTTGCTTTCTTGACTTCTCTGGAACAAGAC
TTTCTCTCTTGAGTTGCTTACTAAAATACTTTATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_k18.b1 MSMg01no236_k18.b1 CHROMAT_FILE:
MSMg01no236_k18.b1 PHD_FILE: MSMg01no236_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:17 2005
         (608 letters)



>mm_chr7_132938384_132939391
          Length = 1008

 Score = 1129 bits (584), Expect = 0.0
 Identities = 602/608 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacactcaaggccaagaaaagctcatgagaagcgctcacctttagaagctcggttaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 651 agacactcaaggccaagaaaagctcatgagaagcgctcacctttagaagctgggttaaac 592

                                                                       
Query: 61  tccattaccacaagggtgtctgtggcctggggatgccggccttccagttcctggtccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tccattaccacaagggtgtctgtggcctggggatgccggccttccagttcctggtccttg 532

                                                                       
Query: 121 gggacatccttctgtactgcatcatggctgggaagtggacattcatctctgttgtggact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gggacatccttctgtactgcatcatggctgggaagtggacattcatctctgttgtggact 472

                                                                       
Query: 181 ggcaggacagggtcctcagtctccgtctcagagaggacgtcttcctcaatagagtcgtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ggcaggacagggtcctcagtctccgtctcagagaggacgtcttcctcaatagagtcgtac 412

                                                                       
Query: 241 tcgtcgttggatccgtcctcttgggtctggaggcttgtgctgagccccattcctttcctc 300
           |||||| |||| |||||||||||||||||||||||||||||||||||||  ||||| |||
Sbjct: 411 tcgtcgctggagccgtcctcttgggtctggaggcttgtgctgagccccaggccttttctc 352

                                                                       
Query: 301 agctcctgcagaaagcccaggagaggtgaaaggtgaggccttgtatggaaccaaagaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agctcctgcagaaagcccaggagaggtgaaaggtgaggccttgtatggaaccaaagaaca 292

                                                                       
Query: 361 gctccagccaacaaccagcagcacctcagccagatgctggggctgctttgaggatgggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gctccagccaacaaccagcagcacctcagccagatgctggggctgctttgaggatgggaa 232

                                                                       
Query: 421 agcaaaggtcagagggcacgaacatgaggggtgctgtgaggagacaccatgaccatggcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 agcaaaggtcagagggcacgaacatgaggggtgctgtgaggagacaccatgaccatggcg 172

                                                                       
Query: 481 actataaaagaaagcatttacttggggcttgcttacagtttcaggggcttggtcctttgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 actataaaagaaagcatttacttggggcttgcttacagtttcaggggcttggtcctttgc 112

                                                                       
Query: 541 cacattaagtttattgcatgtgaatttaaagtgaatttaaagccggacaacccaaactga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 cacattaagtttattgcatgtgaatttaaagtgaatttaaagccggacaacccaaactga 52

                   
Query: 601 ctgatgat 608
           ||||||||
Sbjct: 51  ctgatgat 44


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)