BAC Information

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BAC

Clone NameMSMg01-236K19
Chromosome7 (Build37)
Map Location 46,986,845 - 46,987,080
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050
Downstream geneEG668540, 4930558N11Rik, EG628161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236K19.T7 (MSMg01no236_k19.b1)MSMg01-236K19.TJ (MSMg01no236_k19.g1)
ACCAG401861AG401862
length746754
length of high quality
(start - end)
596 (70 - 665)232 (128 - 359)
definitionCHROMAT_FILE: MSMg01no236_k19.b1 PHD_FILE: MSMg01no236_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:17 2005CHROMAT_FILE: MSMg01no236_k19.g1 PHD_FILE: MSMg01no236_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTATGAATCCCATACATGAAAGGATATTGGATTTTGTCAAAAGCTT
TTTATGATTTTCTTTCTTTGTGCCTTTGCCTGGTTTGGGGGATCAGGGTA
ATAATTGTTTTCCTAAAGAAAGCTTGGAAAAATCCTTTCATTTTCTACTT
GATGGAATAGCTTGAGTAGTATTTATATCATTTATTCTTTGAAGGTATGT
TACAATTCTGAAGTGAATCCATCTGGTCCTAGGCTTTTTCTAGTTAGATT
ATTTTTATTATCCTGGATAACCTGGATCTCACTATGTATGCCAGGTTTGC
CTCTAATTTAAAGAGATTCATTTTTCTTTTACATCCTGTGTGCTGGGACT
AGAGGCATGCCTGAACGATTGATTATTTATTTACTTTGTGTATGTGTGTC
TTAGTTAGGTTACTATTGATATGATGAAACACCATGACCAAAAAAGCAAG
TTGGAGAGAAAAGGGTTTATTTTTCTCACAGTTCATCATCCAAAGCAGTG
AGGACAAGAACCCATGCAGGGCAGGAACCAGGACGCAGAAGCTGTGGCGG
GGGCCATGGAGGGGTGCTGCTTATTGGCTTGCTTCTCATGTTTTGCTCAG
CCTGCTTTCTTATAAAATCCAGAACCACCAGCCCAGGGATGACATCTCCC
ACAACAGGCTAGACCCTCTCCCATCAACTAACTTACTTATTACTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAACAAGGCTGGCAAGATGGTT
CAATGGATAACTTACAGAGTAAATCCGATTGCCTGAGTTCAGTCCCTAGA
ACTCACATAAAAGAAGAAGAAAGTCCACACAACAGGATTGTCCTCTGACC
TCCACATGCACAGTTTAGTACAGACACACACACACACGCACATGCACACA
CTCACACACACATGAATACACACAACAATCAATCAATGAAAACTTAAAGT
CAGAAACAAAGTAGAAGTAAGTGAATAGGAGAGATCAAGTCTTGCAGAGG
TCCTCAGAGAGTTGGTTANATCTCCNAGCTTTGCCCAGCCAGCTTCACAT
TCGAACAAAGCCTTAGGTCCTCAAGACAACAAACAAAACAAGAGATGGGT
CTGATGAGAATACAGCCCAGGGGTTCACTACAACCAAGTACTTAAGACCC
ATCCCCTAAGTCAGCTGCTTTCAAATGAGAAACCAAACAGCAGATGGAAC
CAAACTAAGAGCAAGTCAGGTGTGCTAAGCAGCTGTCCCAGGAAGGCCAC
CCAAGAGCTGGCAATACCTTGGTGAGGTTTACTCACCAGGCAGAGGTGTA
TATGTTGCATTTCACTGTAACCTTTAACCTTGTGAGTAGCCAAACAGCTT
TACACTCCTTCAGCTGCAACCATCCCCACACCCACCATGTACCAGGCACA
TAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_k19.g1 MSMg01no236_k19.g1 CHROMAT_FILE:
MSMg01no236_k19.g1 PHD_FILE: MSMg01no236_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:18 2005
         (232 letters)



>mm_chr7_46986530_46987165
          Length = 636

 Score =  429 bits (222), Expect = e-125
 Identities = 231/236 (97%), Gaps = 4/236 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcctgagttcagtccctagaactcacataaaagaagaagaaagtccacacaacagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 attgcctgagttcagtccctagaactcacataaaagaagaagaaagtccacacaacagga 492

                                                                       
Query: 61  ttgtcctctgacctccacatgcacagtttagtacagacacacacacacacgcacatgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttgtcctctgacctccacatgcacagtttagtacagacacacacacacacgcacatgcac 432

                                                                       
Query: 121 acactcacacacacatgaatacacacaa----caatcaatcaatgaaaacttaaagtcag 176
           ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 431 acactcacacacacatgaatacacacaacaatcaatcaatcaatgaaaacttaaagtcag 372

                                                                   
Query: 177 aaacaaagtagaagtaagtgaataggagagatcaagtcttgcagaggtcctcagag 232
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 371 aaacaaagtagaagtaagtgaacaggagagatcaagtcttgcagaggtcctcagag 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 636
Length adjustment: 9
Effective length of query: 223
Effective length of database: 627
Effective search space:   139821
Effective search space used:   139821
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)