BAC Information

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BAC

Clone NameMSMg01-237H21
Chromosome7 (Build37)
Map Location 134,553,380 - 134,553,940
singlet/doubletsinglet
Overlap genenone
Upstream geneCd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764
Downstream geneZfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237H21.T7 (MSMg01no237_h21.b1)MSMg01-237H21.TJ (MSMg01no237_h21.g1)
ACCAG402423AG402424
length763711
length of high quality
(start - end)		---559 (74 - 632)
definitionCHROMAT_FILE: MSMg01no237_h21.b1 PHD_FILE: MSMg01no237_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:20 2005CHROMAT_FILE: MSMg01no237_h21.g1 PHD_FILE: MSMg01no237_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGGGGGGGAGGGGGGGGGAGGAAGGAAAAAGGAGAGGGGGAAGGTAAA
AAAAGGGGGGGGGGNNNGANNNNNNTTTTCTGACCGGANGGNNNNNNNNN
NNTNCATAAAGAGANGGNNNNNNGGNNNNNNNNNNNNGNNGNNGGNNGTT
GGGCCAAAAAAGGGGGGGGNNNNNNNGGNNGNGGGGGNGGGGGGGGGNGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNNGGGGGGGGGAGG
GGGGGAGGGGGGGGGGGGGTGGTGGGGGGGGGGGGGGGGGGGGGAGGGGG
GGGGAAGAGGAAAGAAAGAGAGGGAGAAAGGGGGGTGGGGGTGGAGAGAG
GGGGGGGGGGGGGGGAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGAGGAAAGGGGGAGGGGGGGGGGGAAGCCCCAGGGGGAAAAAAAAAAAA
GAGGTGGGGGGGGGGGGGGAAAAGTAGGGAGAGGGGAGGGGGGGGGGGGG
GGGGGGGAGGGAAGGGGGGGGGGGGGGGGGGGGAGGGGGGAGGGAGAGGG
GGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGAGGGGGGAGGGGGGGAGG
GAGGAGGAGGGGGGAGAGAGGGGGGGGGAGGGGGGAGGAGGGGAGGGTGG
GGGGAGGGAAGAGGGGAAAGGGGGGGGAGAGAGGAGGAGGGAGGGGGGGG
GGGGAGGGGAGAG

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGGGACTTTTCAGAGAGTATATAAAT
GCTAGGGTCTCAAGAGTATAGGTTGTGGGTTGTTGTTCATTGTTGTTGGT
CAGGGTTTGTTAAGTTAGCAGTGCACAAAGGGGAAAGAACAAGAAGAAAT
TCGATATCCTGATATTGAAGATCAAACTTGCCCCCAAGAATTCATCATTT
AGCATCAAGAAATAGTCTACCAATAGCGTCACCCCATTTCTTACTCCTGA
CTTTATTCAGGGGTTTCTTTCCTTTCCTGTCTATCCTTTTTAATCTCTGG
TCTAGTGTAAGGGGGTTGCAAGGGTGGAAGAAAAGGGGTGGAAAGTGGTA
GAAGAAAGAAGAACCCACACAGTAGCCAAAACCAGGCACACATGCCTTCC
TCTACGCCTCCCTCTGGTCCGGAGTCCCCTTCAGCAGTTACCTCTAAAGT
AGACAAGGAAGGAGGAGATGTTTCTTGAGCTGAGGTCTCTAGTGTATAGA
AAACAATACTGAGAGACTCCAGTATCTTGTTCTTTCTCTCATTTCACTCT
TATTTTTTTGTATTTGTGGTGCTAGGGTTCCAAGGCCTTGTGCATGAGCC
ATATCCTCAGCCTTTGCTTCCCATGCACACAAGGTTTCCCTAAGTGGTCC
TAGCTGTATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_h21.g1 MSMg01no237_h21.g1 CHROMAT_FILE:
MSMg01no237_h21.g1 PHD_FILE: MSMg01no237_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:20 2005
         (559 letters)



>mm_chr7_134553182_134554140
          Length = 959

 Score =  944 bits (488), Expect = 0.0
 Identities = 543/564 (96%), Gaps = 8/564 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggacttttcagagagtatataaatgctagggtctcaagagtataggttgtgggttgt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 199 tggggacttttcagagagtatataaatgctagggtctcaagaatataggttgtgggttgt 258

                                                                       
Query: 61  tgttcattgttgttggtcagggtttgttaagttagcagtgcacaaaggggaaagaacaag 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cgttcattgttgttggtcagggtttgttaagttagcagtgcacaaaggggaaagaacaag 318

                                                                       
Query: 121 aagaaattcgatatcctgatattgaagatcaaacttgcccccaagaattcatcat--tta 178
           ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||   ||
Sbjct: 319 aagaaattcgatatcctgatattgaagatcaaacttg-ccccaagaactcatcatcccta 377

                                                                       
Query: 179 gcatca---agaaatagtctaccaatagcgtcaccccatttcttactcctgactttattc 235
             ||||    ||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 378 --atcagcgggaaatagcctaccaatagcgccaccccatttcttactcctgactttattc 435

                                                                       
Query: 236 aggggtttctttcctttcctgtctatcctttttaatctctggtctagtgtaagggggttg 295
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 436 aggggtttctttcctttcctgtctatcctttttaatctctggactagtgtaagggggttg 495

                                                                       
Query: 296 caagggtggaagaaaaggggtggaaagtggtagaagaaagaagaacccacacagtagcca 355
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 496 caagggtggaagaaaaggggtgaaaagtggtagaagaaagaagaacccacaaagtagcca 555

                                                                       
Query: 356 aaaccaggcacacatgccttcctctacgcctccctctggtccggagtccccttcagcagt 415
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 556 aaaccaggcacacatgccttcctctatgcctccctctggtccggagtccccttcagcagt 615

                                                                       
Query: 416 tacctctaaagtagacaaggaaggaggagatgtttcttgagctgaggtctctagtgtata 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 616 tacctctaaagtagacaaggaaggaggagatgtttcttgagctgaggtctcaagtgtata 675

                                                                       
Query: 476 gaaaacaatactgagagactccagtatcttgttctttctctcatttcactcttatttttt 535
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 676 gaaaacaatactgagagactccagtatcttgttctttctctcatttccctcttatttttt 735

                                   
Query: 536 tgtatttgtggtgctagggttcca 559
           ||||||||||||||||||||||||
Sbjct: 736 tgtatttgtggtgctagggttcca 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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