BAC Information

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BAC

Clone NameMSMg01-260E08
Chromosome7 (Build37)
Map Location 68,307,896 - 68,308,397
singlet/doubletsinglet
Overlap geneD0Kist2
Upstream geneLOC100041201, LOC100041211, LOC664896, LOC100041229, LOC625287, LOC100041248
Downstream geneLOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260E08.T7 (MSMg01no260_e08.b1)MSMg01-260E08.TJ (MSMg01no260_e08.g1)
ACCAG402981AG402982
length744737
length of high quality
(start - end)
326 (54 - 379)502 (77 - 578)
definitionCHROMAT_FILE: MSMg01no260_e08.b1 PHD_FILE: MSMg01no260_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:19 2005CHROMAT_FILE: MSMg01no260_e08.g1 PHD_FILE: MSMg01no260_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAATCTTATTTCTGTCAAAAAATCTAAGATTAAAAACT
CAGGTGATAACACATGCTAGTGAGGATGTAGACTAAGGAGAACATTCTCC
TTTTGTTGGAGGGGGGAGCGCAAACATTACAACCACTTTGGAAATCAACT
TGACCATCTCTCAGGAATCTGAGAATAGTTTTACTGAAGACCTAGATATA
CCACTTCTGGGACTATACCTAAAAGATGTCACACTATACCACAGGGACAC
TTCTCACCTACATTTATACCAATTTTATTAATATTAGCCAGAAACTAGAA
ATAACATAGTTGTCCCTCAATTGACAAATAGATCAAGAAATTTTGGTATG
CAATGGAATACTTCAGCTATTACCACCCAAGATATCATGAATTTTGCAGG
GAAATAGAATTTGAGAGTAACAGACTGAGTCAGGTAACCTGAAGCCAGAA
ATCAATATGGTATGTACACATTTCTGAGTGTATATTAGCCATAATATGCA
GGACATATATGCTGCAATCCCTATATACCAATATACTGGTTAATATTGGA
AGATCTAATGCCACCTGCAGAATTCTCACTAATAACTAGATATTCATCAT
AGGTGGATAGCGAGACCGAAAACTTTATATTAGGAGGTAATGAGTGGACA
ATGTATGGCCCCATCCTTCTTCATTTTCCCCAATCTCTCTTCCT
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGTTTAAGAAATGGCATATTAA
GAGAAATAAATTTGGAAGCACATATGTAAATAAAATAATATTTCTGACAC
ACAACACATACACATAGACACACACACACAAACATTATACATATACATAT
ATGCAATATGTATATCATAACATATATAATATTAATTACAGCCAAATACC
TATATAAATCAATTTATTTAAAAAATACCCACTACAGATTTTACAAATAT
TCTCCATGTATTTCTTTATTTCTGAAATTATAATTAAAATTTCCCCTATT
CTATTCTCCATTCATTCCTCTTTTTTCATCTTATTTCATTTTCAAATTCA
CAAAATATTTCCTTTTTAACCATTTCTACATACATATATTTGCAAGTATA
GCTATGCTTCTTCTTAAAAAACTAAATACAGAAACCTTAGTTTATATAAT
GATACATACATTTTCATTTAAGGATACAAATTTTTATCGTTCAAGGCCAC
TCTGAGTTCAAAGCCAAACTGATCTACTTAGTGAGGTCCAGAACAGTAAG
TTCATAGAGAGAACTTTTGTCACAATAAGAACAAACAAAAATGGATTACT
AATGCTCTCATTTTTCGAAAGATTCTAAGTATCACCCTTTAAAAAAACAA
CCAGATGAAACTGAACTGAGGCACAAAATACCAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_e08.g1 MSMg01no260_e08.g1 CHROMAT_FILE:
MSMg01no260_e08.g1 PHD_FILE: MSMg01no260_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:19 2005
         (502 letters)



>mm_chr7_68307588_68308489
          Length = 902

 Score =  932 bits (482), Expect = 0.0
 Identities = 497/502 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtttaagaaatggcatattaagagaaataaatttggaagcacatatgtaaataaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 aatgtttaagaaatggcatattaagagaaataaatttggaagcacatatgtaaataaaat 751

                                                                       
Query: 61  aatatttctgacacacaacacatacacatagacacacacacacaaacattatacatatac 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aatatttctgacacacaacatatacacatagacacacacacacaaacattatacatatac 691

                                                                       
Query: 121 atatatgcaatatgtatatcataacatatataatattaattacagccaaatacctatata 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 690 atatatgcaatatgtatatcataatatatataatattaattacagccaaatacctatata 631

                                                                       
Query: 181 aatcaatttatttaaaaaatacccactacagattttacaaatattctccatgtatttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aatcaatttatttaaaaaatacccactacagattttacaaatattctccatgtatttctt 571

                                                                       
Query: 241 tatttctgaaattataattaaaatttcccctattctattctccattcattcctctttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tatttctgaaattataattaaaatttcccctattctattctccattcattcctctttttt 511

                                                                       
Query: 301 catcttatttcattttcaaattcacaaaatatttcctttttaaccatttctacatacata 360
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 510 catcttatttcattttcaaattcacaaaatatttcctttttaagtatttctacatacata 451

                                                                       
Query: 361 tatttgcaagtatagctatgcttcttcttaaaaaactaaatacagaaaccttagtttata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tatttgcaagtatagctatgcttcttcttaaaaaactaaatacagaaaccttagtttata 391

                                                                       
Query: 421 taatgatacatacattttcatttaaggatacaaatttttatcgttcaaggccactctgag 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 taatgatacatatattttcatttaaggatacaaatttttatcgttcaaggccactctgag 331

                                 
Query: 481 ttcaaagccaaactgatctact 502
           ||||||||||||||||||||||
Sbjct: 330 ttcaaagccaaactgatctact 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)