Query= MSMg01no261_l22.b1 MSMg01no261_l22.b1 CHROMAT_FILE:
MSMg01no261_l22.b1 PHD_FILE: MSMg01no261_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:12 2005
(612 letters)
>mm_chr7_130528933_130529947
Length = 1015
Score = 1110 bits (574), Expect = 0.0
Identities = 603/614 (98%), Gaps = 3/614 (0%)
Strand = Plus / Plus
Query: 2 gaattccatactttatctacctgcaaacttgccttctgtttccgtccaggatacttgttg 61
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattccatactttatctacttgcaaacttgccttctgtttccgtccaggatacttgttg 261
Query: 62 acagagg---gcactgaagccttcaagtggaactgcattcgtgttcctgtaagaaccttc 118
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 262 acagaggagggcactgaagccttcaagtggaactgcattcgtgttcctgtaagaaacttc 321
Query: 119 acagtcctttcctggaggacatttgtctctgtcctgtagaacacacttgtagctagaaaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acagtcctttcctggaggacatttgtctctgtcctgtagaacacacttgtagctagaaaa 381
Query: 179 gatgatttcatagttgtagtctcccaataagagggagcagaaattacttcttaggaggtg 238
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 382 gatgatttcatagttgtagtctcccaataagagggagcagaaaatacttcttaggaggtg 441
Query: 239 tgcttcagctgggttgttcgtaggagggtccatgaaacagctgtgctgtggatcaaacgc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgcttcagctgggttgttcgtaggagggtccatgaaacagctgtgctgtggatcaaacgc 501
Query: 299 taacagccaaggccaggcagctctgttggcgaggcacactcagggcgttagaatgtttgt 358
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 taacagccgaggcctggcagctctgttggcgaggcacactcagggcgttagaatgtttgt 561
Query: 359 ctagagaaggattgaaggggcaatagaaacccagtcacttgtcagctagaagagaggggg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctagagaaggattgaaggggcaatagaaacccagtcacttgtcagctagaagagaggggg 621
Query: 419 cttggtgtctttgggggtgacacaatgcctgtgctacttagtgtttgtcagtttgacaca 478
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 622 cttggtgtctttgggggtgacacaatgcctgtgctacttagtgtttgtccgtttgacaca 681
Query: 479 agctcaggccatctggggagagggaacttcaaatgaggaaaagtctctgtgagagtgact 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 682 agctcaggccatctggggagagggaacttcaaatgaggaaaagtctccgtgagagtgact 741
Query: 539 tgcagacaagtctgtggagcactttttggattaatgattaatgtgggagggccctggcca 598
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgcagacaagtctgtggagcattttttggattaatgattaatgtgggagggccctggcca 801
Query: 599 ctgtgaccaagtga 612
||||||||||||||
Sbjct: 802 ctgtgaccaagtga 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1015
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1005
Effective search space: 605010
Effective search space used: 605010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_l22.g1 MSMg01no261_l22.g1 CHROMAT_FILE:
MSMg01no261_l22.g1 PHD_FILE: MSMg01no261_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:12 2005
(556 letters)
>mm_chr7_130682884_130683839
Length = 956
Score = 1007 bits (521), Expect = 0.0
Identities = 533/537 (99%)
Strand = Plus / Minus
Query: 20 ccaggctcatttttctctccatatgataggctaaccagtgaaggaatgaattttgcaaaa 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 ccaggctcatttttctctccatatgataggctaaccagtgaaggaatgaattttgcaaaa 897
Query: 80 gagggaggacttctttgtggagcaccaactaaagacagtggacaaacaacacatctgcct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gagggaggacttctttgtggagcaccaactaaagacagtggacaaacaacacatctgcct 837
Query: 140 ccctgagaacaggaatatttgcagcataaagaattaatatggactgaggtatggaaaaag 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ccctgagaacaggaatatttgcagcataaagaattaatatggactgaggtatggaaaaag 777
Query: 200 gtgattggaggcaacatgaaaggtggtgtgatctgggagaagcataaagagacagggaga 259
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 776 gtgattggaggcaacatgaaaggtggcgtgatctgggagaagcataaagagacagggaga 717
Query: 260 gagagaaaagaagatgaacaggaagaggttaaacatgtgatctgtagagttttgatgtca 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gagagaaaagaagatgaacaggaagaggttaaacatgtgatctgtagagttttgatgtca 657
Query: 320 catacctatgcagcccaagtgacaaggtaacttccactaattcaagctagacaaggctgt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 catacctatgcagcccaagtgacaaggtaacttccactaattcaagctagacaaggctgt 597
Query: 380 ctccaattccatctttaaaatattaccaaggtgatcataaatcacaaatgctactcacag 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctccaattccatctttaaaatattaccaaggtgatcataaatcacaaatgctactcacag 537
Query: 440 taaagttaaagctagcaggggtctatcgtgttattgttcagctaagccacttctaaggtc 499
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 taaagctaaagctagaaggggtctatcgtgttattgttcagctaagccacttctaaggtc 477
Query: 500 agtaagggaggcaaaccactaaaaccaagtgaggttatggagatttttcccatctcc 556
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 476 agtaagggaggcaaaccactaaaaccaagtgaggctatggagatttttcccatctcc 420
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
