BAC Information

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BAC

Clone NameMSMg01-261O08
Chromosome7 (Build37)
Map Location 123,321,904 - 123,480,339
singlet/doubletdoublet
Overlap genePlekha7, Rps13
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik
Downstream genePik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261O08.T7 (MSMg01no261_o08.b1)MSMg01-261O08.TJ (MSMg01no261_o08.g1)
ACCAG404148AG404149
length721723
length of high quality
(start - end)
671 (51 - 721)234 (130 - 363)
definitionCHROMAT_FILE: MSMg01no261_o08.b1 PHD_FILE: MSMg01no261_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:23 2005CHROMAT_FILE: MSMg01no261_o08.g1 PHD_FILE: MSMg01no261_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,321,904 - 123,322,569)(123,480,106 - 123,480,339)
sequence
TTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCTCTTTGTTACCAAATTTCCTCAAAACAAAAGTTCATCAAA
ACCAAACCAAACAAAAAGACTTGGTCACAAGGAAAATAGTAATTTTACAC
ACCAGTTTTCTCCAAGGCCCAGGAGAATCTCAGAGTTGGGTTTAGCTGTT
AAACCATCTTTCCTTGGGGCTGGAGAAATGGCTTTAGTGGTTAAGAGCAT
TTGCTGCTCTTGCAGGGGACCTGAGTTCAGTTCTCAGAACCACATGGCAG
CTCACAACTGTTTGTTAACTTCAGTTTCAGGGGATGAAATGCCCTCTTCT
GGCTTCCATGTTCACCAGGCATGAGCAGTGAACACATCCATACATGCAAG
CAAAATACTCATACACATAAAATATAGTCTTTCCCTATTCAGAAGTTTTG
ACAGTTAAAACAAAAGAACAGTTTCTAACCCTGAATACAACATGAGGCTT
GTTTGCCACCTCCCACATATCCCTTCCACCAACACACACTAAAGTACCCA
AACCAAATTAAGTTAATGTTGTCATCTGATGGTCAAGGCCTGCAGACTGG
CCAGATGATTTCTGCAGTCTCCATAGCATTTGCCTCTTTCTTACTGGGAG
GTCTTGATCCATCCTCCGTCCATGGTTCAAATGCTGCTTCCCAGGAAGGC
TTCCTCGGCTGTGTGAGCACN
NCCCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCCCAGCAACCACATGGT
GGCTCACAACCATCTACTAGAGGATCTCGATGACTTCTTTCAGTGGGCAG
ATATATATGCAGCAGAGCATTCATACATTAAATAAAAAGCCTCTGGCTCC
CAAAATCTTCAGAGAGAGAGATGGCTTATGTAAGCTTATCCTTTGAAATA
ACTGAGTTTTGCCTGAGTGCCAAGCTGTTTGCCGGTACTAGAGTTCAAAC
TATTGCAGGTAGTGGGCTAGAGAGATGGCTTAGTGCTACAATGGCTTTCT
GTTGTAGAAGACTATATTTTGGTTCCCACCACCCACCACAAGTGCTTATT
ACTCTAGTTCTTACCCAATATCGTCTTCTGAAAACTGGACACTGCACTCA
GCTTGCACAGCTGTATAAACAAGTAATTTAAAAAGGGGGGGGGGTGGCTA
GAGAGAAGGCTAAGGGGTTAAGAGCACTTACTGGTCTTGCAGAGGACTTG
GCTCCAGTTTCAAACATCCATGTAGCACCTAAGAATTTTCTGTTAACTCC
AGTTCCAAAATATCTGATACCCTCTACTGGTCTCCATGGTCACTGCAGGT
ACTGTGATGTCTAGACAGACTTGACTCACTTACACACATCCTTTACCAGT
AAATTAAATTTTTTTTCCAGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_o08.b1 MSMg01no261_o08.b1 CHROMAT_FILE:
MSMg01no261_o08.b1 PHD_FILE: MSMg01no261_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:23 2005
         (671 letters)



>mm_chr7_123321700_123322770
          Length = 1071

 Score = 1241 bits (642), Expect = 0.0
 Identities = 660/666 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctttgttaccaaatttcctcaaaacaaaagttcatcaaaaccaaaccaaacaa 64
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttgcaatcaaatttcctcaaaacaaaagttcatcaaaaccaaaccaaacaa 264

                                                                       
Query: 65  aaagacttggtcacaaggaaaatagtaattttacacaccagttttctccaaggcccagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagacttggtcacaaggaaaatagtaattttacacaccagttttctccaaggcccagga 324

                                                                       
Query: 125 gaatctcagagttgggtttagctgttaaaccatctttccttggggctggagaaatggctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatctcagagttgggtttagctgttaaaccatctttccttggggctggagaaatggctt 384

                                                                       
Query: 185 tagtggttaagagcatttgctgctcttgcaggggacctgagttcagttctcagaaccaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtggttaagagcatttgctgctcttgcaggggacctgagttcagttctcagaaccaca 444

                                                                       
Query: 245 tggcagctcacaactgtttgttaacttcagtttcaggggatgaaatgccctcttctggct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggcagctcacaactgtttgttaacttcagtttcaggggatgaaatgccctcttctggct 504

                                                                       
Query: 305 tccatgttcaccaggcatgagcagtgaacacatccatacatgcaagcaaaatactcatac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccatgttcaccaggcatgagcagtgaacacatccatacatgcaagcaaaatactcatac 564

                                                                       
Query: 365 acataaaatatagtctttccctattcagaagttttgacagttaaaacaaaagaacagttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acataaaatatagtctttccctattcagaagttttgacagttaaaacaaaagaacagttt 624

                                                                       
Query: 425 ctaaccctgaatacaacatgaggcttgtttgccacctcccacatatcccttccaccaaca 484
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 625 ctaaccctgaatacaacatgaggcttgtttgccaccccccacatatcccttccaccaaca 684

                                                                       
Query: 485 cacactaaagtacccaaaccaaattaagttaatgttgtcatctgatggtcaaggcctgca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cacactaaagtacccaaaccaaattaagttaatgttgtcatctgatggtcaaggcctgca 744

                                                                       
Query: 545 gactggccagatgatttctgcagtctccatagcatttgcctctttcttactgggaggtct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 745 gactggccagatgatttctgcagtctccatagcatttgcctctttcttactgggaggcct 804

                                                                       
Query: 605 tgatccatcctccgtccatggttcaaatgctgcttcccaggaaggcttcctcggctgtgt 664
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 805 tgatccatcctccgtccatggttcaaatgctgcttcccaggaaggcttcctcagctgtgt 864

                 
Query: 665 gagcac 670
           ||||||
Sbjct: 865 gagcac 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no261_o08.g1 MSMg01no261_o08.g1 CHROMAT_FILE:
MSMg01no261_o08.g1 PHD_FILE: MSMg01no261_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:24 2005
         (234 letters)



>mm_chr7_123479906_123480539
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgacttctttcagtgggcagatatatatgcagcagagcattcatacattaaataaaaag 60
           |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 434 atgacttcttccagtgggcagatttatatgcagcagagcattcatacattaaataaaaag 375

                                                                       
Query: 61  cctctggctcccaaaatcttcagagagagagatggcttatgtaagcttatcctttgaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cctctggctcccaaaatcttcagagagagagatggcttatgtaagcttatcctttgaaat 315

                                                                       
Query: 121 aactgagttttgcctgagtgccaagctgtttgccggtactagagttcaaactattgcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aactgagttttgcctgagtgccaagctgtttgccggtactagagttcaaactattgcagg 255

                                                                 
Query: 181 tagtgggctagagagatggcttagtgctacaatggctttctgttgtagaagact 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tagtgggctagagagatggcttagtgctacaatggctttctgttgtagaagact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)