BAC Information

Click to search

BAC

Clone NameMSMg01-263B01
Chromosome7 (Build37)
Map Location 99,597,007 - 99,597,346
singlet/doubletsinglet
Overlap geneDlg2
Upstream genenone
Downstream geneCcdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263B01.T7 (MSMg01no263_b01.b1)MSMg01-263B01.TJ (MSMg01no263_b01.g1)
ACCAG404990AG404991
length747802
length of high quality
(start - end)
315 (51 - 365)342 (72 - 413)
definitionCHROMAT_FILE: MSMg01no263_b01.b1 PHD_FILE: MSMg01no263_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:52 2005CHROMAT_FILE: MSMg01no263_b01.g1 PHD_FILE: MSMg01no263_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTGGAACAGTAGCAAGTGCTCCTAACAGCTGAGAGAATG
TATTAATTATGTTTCTGTTCCTAAATACCATAACCAAGCATCTTAGAGAA
GGAATGATTTATTTAGGTTTATAGTTCCACAAAGGTGTCAATCCTGGCAG
GGAGCTATAATTATAGTAGCAATCTGCTAGCTTGCTGTAGCTAGCTGTAG
TAGGCATGGCAGCAGGAGCAGGAAGCAGAGAGCTTTGAAGGAGAGAGAAC
AAAACTCAAAGTGATGGGGGGCTTTTTAGCTCTTAGAGCCTAATCTCATT
GACTTCTTCCTGTTAGTACTGCACTGCTTACCTCTCTCTCAATCAACTAG
GGACCCTGTGTTCAAATACCGGAGCCTTTGTCATTCAAACAGTAACAGCC
ATGTTAATTGGTTTATGTTTTAAAGACTATCAGTCTGAATATTGAGGATA
TAATAGACTGGAGGGTGAGAAAGAATATAACATTTATAGTCTCTCGATTA
TTTTCTTGATTGTAGTGAGTTTTGCTTCACTGATTTGGCTCCCACTGGAT
TGTATACTCTCCTCCCCCTCCCCCCAACTCCATCCCGACTCCAAGGATCT
TTGGCACCCTTGAATGAAAGACACACTTCTTTACCCTCCCTCTTTCTCTT
TCTCACTCCCCCCCCCATTACCTTATCCTTATGTTTAACATGTTCTG
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTGGATATGAATTAATTATTTAAGGGTA
TGATATATATGGTATTCATACCATGTATACACATTACCTGAGGTCAGAGT
CAATGTTGGAAACACATACACACTTCAGTCTGTAAATATTCTTCCTCACT
GAAACCTGTGCTTCAGAAACCATTTCTCATACAGCTGTGCAGTTTCTTGT
AGCAGCTGAAGACAAGCTAAGGCAGGCAGCGAATTTAGACTGAGATCAGC
TGAAAGAGTACAGTTTCTCCCTTGCAGCTCACAAGGACAGACAGCTAAGT
GGCAAGGTTGACTCCCAATGGGATGGCAAACTTTTCTTCTTTTCAAATTT
GTGTTTCCTAACCGCATCTTAATTTCTGAGTGCACCAGGTTGTACCCATT
AGATCCTTTTACTATGACAATTTTGTGCTTCTCTCTGACAGGATGTTTCT
CCATCAAGCTGTAACGCAGGATGGGAGGCTAGGCATCTTCCCCTTCTTTC
CCCCCCCTCCTCTCTTTTTTTTTTTTCTTTCATTATTTCTTATACTCTCT
TTTTCTCTACACATCTTTTCCCTTCACCGTCCCTCATTTCTTCCTCTCCC
TTACCTTCTCGTATTTTTTATCTTCCACCCCTCATTACATCACCTTTTAA
TATTGTCTATCTATTTAATCGCACCAGCATCAAATATCCCACCCCACATC
TATATTACATCTATATTCATAACCATCTGAGTACTTCTCACCTTATTATC
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_b01.g1 MSMg01no263_b01.g1 CHROMAT_FILE:
MSMg01no263_b01.g1 PHD_FILE: MSMg01no263_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:52 2005
         (342 letters)



>mm_chr7_99596807_99597548
          Length = 742

 Score =  634 bits (328), Expect = 0.0
 Identities = 337/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggatatgaattaattatttaagggtatgatatatatggtattcataccatgtataca 60
           |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tgtggatatgcattaattatttaagggtatgatatatatggtatgcataccatgtataca 260

                                                                       
Query: 61  cattacctgaggtcagagtcaatgttggaaacacatacacacttcagtctgtaaatattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattacctgaggtcagagtcaatgttggaaacacatacacacttcagtctgtaaatattc 320

                                                                       
Query: 121 ttcctcactgaaacctgtgcttcagaaaccatttctcatacagctgtgcagtttcttgta 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ttcctcactgaaacctgtgcttcagaaaccatttctcgtacagctgtgcagtttcttgta 380

                                                                       
Query: 181 gcagctgaagacaagctaaggcaggcagcgaatttagactgagatcagctgaaagagtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagctgaagacaagctaaggcaggcagcgaatttagactgagatcagctgaaagagtac 440

                                                                       
Query: 241 agtttctcccttgcagctcacaaggacagacagctaagtggcaaggttgactcccaatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttctcccttgcagctcacaaggacagacagctaagtggcaaggttgactcccaatgg 500

                                                   
Query: 301 gatggcaaacttttcttcttttcaaatttgtgtttcctaa 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatggcaaacttttcttcttttcaaatttgtgtttcctaa 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)