BAC Information

Click to search

BAC

Clone NameMSMg01-264I13
Chromosome7 (Build37)
Map Location 32,101,852 - 32,102,142
singlet/doubletsinglet
Overlap genenone
Upstream geneAI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe
Downstream geneLOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361, LOC668362, EG624584, LOC100043355, LOC546951, EG626740, EG668371, EG668377, LOC100043842, LOC634929
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264I13.T7 (MSMg01no264_i13.b1)MSMg01-264I13.TJ (MSMg01no264_i13.g1)
ACCAG406054AG406055
length717766
length of high quality
(start - end)		291 (425 - 715)239 (131 - 369)
definitionCHROMAT_FILE: MSMg01no264_i13.b1 PHD_FILE: MSMg01no264_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:45 2005CHROMAT_FILE: MSMg01no264_i13.g1 PHD_FILE: MSMg01no264_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGNGGAATTNTGNNT
TTCCCCAAACATATATCCCCTGAATAAAAGAGACAGAAATCTGGCATTTT
TATGTTCACTCTGACGGNTTANATTGGGNAGGTTCTGTGGTACTTTAATT
TANACANAGNCATGGGNATCANATTACTTGGTGGNTTAGNTGGNTTGGTC
TGTCCCACGTGTGTCCTCAAGGCAAGCTTCTCTTAAAGTGCTCATGGTCC
ATCCTGGCTCATGATGACCTTCTTCTCCCTCTCCTTGTGGCCCTAACTGA
GATTTTCCTACTAGATTTCAATTTTTGTCTTCCTCCCTCTCCTGNCAGTT
ANATACCCCCCCCCCCCCCTCCCAATGAGAGTATATTGGAGTGTTNCTTA
AAGNACATAAAATCNAAACNNAGACCATGCGCAGACTGCAACATGATCTT
TGGGCACGAAGCTCAGCATCTGAATACACAGTGCACAGACCAACCCCAAC
AGAAAGAAGTCTCATTAATCTGTAAAGAAAAATTTAAATATTCAAAAGAT
AAAATAAAACACAGTGGCAGAGGTGAAGAGATGGCTCAGTGGTTAAGAGC
AGTGTCTGCTTTTCCAGAGAAGGGCTCAATTCCCAGCATACACATGGCTG
CTCACTACTGAAGCAAATCCAACACTTTCTTTTTTTTTTAAATTTCATAA
TATATTTTGACATCTCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTATGACCATGATTAAGATTTCA
AGTTTAATTTCCTTCTGATAATAAACCCTTCAGCTAGCACCTGAGATTCC
TGAAATTATTCCCCATGCTATAGGGTATTTTGGTACCTCTAGCCTTCCAG
CAATGACCTTTGCCAGGATTTTTCTGCTTCTAAATTTAAATTAGTTTGAA
CGTCCATAGGCATTTTGGGGTTTTCCTTTCCCAAAAGGTCACCCAATAAT
TCAGGGGGTTCTAGAACTACTCATCTCAATATCCATCACTATGCAGGTGG
CATTTGTCATTTTCTTCTCTCTTCCTGAGCATGCTCACCAACATGTATAA
ATCAGTATCATGGCTGCTTTTGCAAAGCTGGAGGAGGATGTGTAGGGCTA
AAGAATACACAGGAACAGAAGCAGAGCTCCAGCAATGGATTCTCTCTGGT
ACAGGATTTTGCCTATGGAAAAAGATCTGATCCTTCTAAGGCTACTTCCA
AAACATTCAAGAAAAATAATGATGTTGCAGGATGTGGCCTGATAAGTAGG
ACCGTAGTTAGGCTTATAAGAAGCTACAGTGGAACAGCTGTGACTTTAAA
GTTTCATGCTCCCTTGAAACTTTCCCCAACAATGCCACCTCTAACGGGGT
ATTATTATGATTATTGGCGCTTATTGGTGTGTGATTAATAATCCACTGTT
TCATTTTGTTTAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_i13.b1 MSMg01no264_i13.b1 CHROMAT_FILE:
MSMg01no264_i13.b1 PHD_FILE: MSMg01no264_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:45 2005
         (291 letters)



>mm_chr7_32101652_32102342
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatgcgcagactgcaacatgatctttgggcacgaagctcagcatctgaatacacagtgc 60
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ccatgcacagactgcaacatgatctttgggcatgaagctcagcatctgaatacacagtgc 260

                                                                       
Query: 61  acagaccaaccccaacagaaagaagtctcattaatctgtaaagaaaaatttaaatattca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 acagaccaaccccaacagaaagaagtctcattaatctgtaaagaaaaatttaaaaattca 320

                                                                       
Query: 121 aaagataaaataaaacacagtggcagaggtgaagagatggctcagtggttaagagcagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagataaaataaaacacagtggcagaggtgaagagatggctcagtggttaagagcagtg 380

                                                                       
Query: 181 tctgcttttccagagaagggctcaattcccagcatacacatggctgctcactactgaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 381 tctgcttttccagagaagggctcaattcccagcatacacatggctgctcacaactgaagg 440

                                                              
Query: 241 aaatccaacactttcttttttttttaaatttcataatatattttgacatct 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatccaacactttcttttttttttaaatttcataatatattttgacatct 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |