Query= MSMg01no266_a07.b1 MSMg01no266_a07.b1 CHROMAT_FILE:
MSMg01no266_a07.b1 PHD_FILE: MSMg01no266_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:41 2005
(585 letters)
>mm_chr7_73712189_73713173
Length = 985
Score = 1027 bits (531), Expect = 0.0
Identities = 578/609 (94%), Gaps = 25/609 (4%)
Strand = Plus / Plus
Query: 1 cagggaaacacattggcaaagttttacttggccacaggtatgaatgccagacttcctgga 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 178 cagggaaacacattggcaaagttttacctggccacaggtatgaatgccagacttcctgga 237
Query: 61 gatcttaactctaccaagaatagaagagccagcatgcaagtagcttcaaggtacacacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gatcttaactctaccaagaatagaagagccagcatgcaagtagcttcaaggtacacacac 297
Query: 121 ccttcctttctctgtgctcagtccttaaccactgggacccattctctggctgtcctcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccttcctttctctgtgctcagtccttaaccactgggacccattctctggctgtcctcttg 357
Query: 181 ggaaccctacatatacataaggctctccgtggcttggc---------------------- 218
||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaaccctacatatacataaggctctccgtggcttggcaaaaaaaaaaaaaaaaaaaaaa 417
Query: 219 --aaaaaaaaaaaaaaaaaaaaatcccctgttttctcttgaatacagaagaaatctttag 276
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 418 aaaaaaaaaaaaaaaaaaaaaaat-ccctgttttctcaagaatacagaagaaatctttag 476
Query: 277 ctcactttttcccccctgggtacatcctgttaaaaacaagtagccaacaagttgtcagag 336
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ctcactttttcccccctggggacatcctgttaaaaacaagtagccaacaagttgtcagag 536
Query: 337 ataagctgggactcctttccgcagctgctccatctgagggtgaagatccgatactgggtc 396
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gtaagctgggactcttttccgcagctgctccatctgagggtgaagatccgatactgggtc 596
Query: 397 tgggatcaggggttgggacttgaacgtacctgatggtcttaactgctaccctggaagtcc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tgggatcaggggttgggacttgaacgtacctgatggtcttaactgctaccctggaagtcc 656
Query: 457 gagtctagctagctgcctttccgtgcacatctgaccacaagtctgaggagtcagagaggt 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gagtctagctagctgcctttccgtgcacatctgaccacaagtctgaggagtcagagaggt 716
Query: 517 cggaaacatagcatagcggcagaacatttgtctagcataataaatgcatctatgtgcaca 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cggaaacatagcatagcggcagaacatttgtctagcataataaatgcatctatgtgcaca 776
Query: 577 ttattattg 585
|||||||||
Sbjct: 777 ttattattg 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no266_a07.g1 MSMg01no266_a07.g1 CHROMAT_FILE:
MSMg01no266_a07.g1 PHD_FILE: MSMg01no266_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:41 2005
(288 letters)
>mm_chr7_73874494_73875181
Length = 688
Score = 557 bits (288), Expect = e-163
Identities = 288/288 (100%)
Strand = Plus / Minus
Query: 1 gtgaagagcagaaggctcaccctcagcacatttcaggtaacagattaaccttggatttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gtgaagagcagaaggctcaccctcagcacatttcaggtaacagattaaccttggatttag 429
Query: 61 agtcactcaatgtatcctgtaccagcatatatttgcaaaatgcctcacttcactggtttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agtcactcaatgtatcctgtaccagcatatatttgcaaaatgcctcacttcactggtttc 369
Query: 121 cctcttcatgcagcaagtatggaatttatgacaagaaaaaaaaagcagtctaaatatatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cctcttcatgcagcaagtatggaatttatgacaagaaaaaaaaagcagtctaaatatatg 309
Query: 181 tcgatagataataattcagtgaaatattttctgattgtgaatataatataaaattggttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcgatagataataattcagtgaaatattttctgattgtgaatataatataaaattggttt 249
Query: 241 attatataaaatgggcttatcatctgcttctccttaactgatcagaac 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 attatataaaatgggcttatcatctgcttctccttaactgatcagaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
