BAC Information

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BAC

Clone NameMSMg01-266B05
Chromosome7 (Build37)
Map Location 57,984,815 - 57,985,104
singlet/doubletsinglet
Overlap geneNell1
Upstream geneHtatip2, Prmt3, Slc6a5, 4933405O20Rik
Downstream geneEG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971, LOC668779, Tmem16e, Slc17a6, EG620599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266B05.T7 (MSMg01no266_b05.b1)MSMg01-266B05.TJ (MSMg01no266_b05.g1)
ACCAG407163AG407164
length821713
length of high quality
(start - end)
152 (45 - 196)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no266_b05.b1 PHD_FILE: MSMg01no266_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:46 2005CHROMAT_FILE: MSMg01no266_b05.g1 PHD_FILE: MSMg01no266_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCCAGAGTGCCGGGGAAACAGACAAGAAGTGGAAAGTGGAAAAA
ACCTGGGAAATGAGGGGAAATAACACAAAACTGCAGTGGTGTGTGCGCGC
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNANNNAC
NNNNNNANANNNANANAAANANACCACCACACNCCCCCCCACCCCCCCCC
CCCCCCCCCCTCTCACTCTTCCCCCCTCTTTCTCCCCATCTCCCTCCTCC
TTCTCCCCCCCCCCCCCCCCCATTTTTTTTTTTTCTTCCCCCCACACCCC
CCCCCCCACCCACCTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCNNNNAA
ANCCCCTTTATTTATTNACCCTTCCCCCCCCCCCCCCAAAAAAAACAACA
AATCCCTCCCTTCCTCTCCTCTCCCTCTTTCCCCCCTCTCCCCCCCCTCC
CCTACCTTCCTTCCTTCCTCTCCCTTCCCCCCTCCCCCCCCCTTTTTTTT
CTTCCTCCCCCCCCTCCTTTCTCTCTCCCCCCATCCCTCATTTCCTCCCC
TCCCTCTCTTTCTTACTCCCCTTCCTCTTCCCCCCTTCCTCCTTCCCTCC
TTCCCCTTTTTCTCCTTCCCCCTCCCCTCCCTCCCCCCTCCCTTCCTCTT
CTTCCCCTCTTCCCCCCCCCCCCCTTTCTTCCCCCCCCTTCCCCCTTCTC
TTTCCCCCTCTCCATCCCCCCCCCTCTTCCCCTTCTTTTCCCCCCTTTTT
TCCCCCCCCCCCCTTTCCCCG
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAGTGATGGGAGGAAAGATTAAC
CATAACTCAAGATGCACATTCGGGACAGAACACCCAGAATTGGGAGTTTG
AAGCGACATGAAAATCTAATGACACTTTGGGGTTGTGAGGTGTGCTGTGG
GTGTAATGACCTCTTGGTATCCATCCCACTGTCAGTCACCAAGCCTTCTG
TTTATAATCAAATATTGACTCCTATATAAGTTTAGATTTGAGTAATAGTT
TTATACATTGAAAAATTGAAATCAAATAAATGTTTAAGCAAATATTATTC
TCTTATCTTTCTAGAATTTTTGTCCCACCCCCGCTCTGTGTNNCTTTTAA
ANNATAACCCCCANNTTCCCCTTTTTTCCCNAGGGGGGTTTTTTTCCCTT
NNNNTTTGGTCCCCAATTCCTGGACAAAAAAACATTTGGGCCAACCCTTA
CCCCCCTTTAAAAGGGGCCCTTTTTAAACGTGGCCCTTTTCCCGGAAAAC
CCCCTTCTCAAAACCCGGGGGGGGGTGNNTTGAAACCCCTTGGGTGTCAA
AGGGGAAAAAAAAAAATTTCTGCCCCCGCCGGGTGGGGGGGGGCAAAAAT
ATTTTTTTTTTTTTGGGGTGAGGGGGTGGGGGAAAAACTACACTTTTTTA
TTTTANTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_b05.g1 MSMg01no266_b05.g1 CHROMAT_FILE:
MSMg01no266_b05.g1 PHD_FILE: MSMg01no266_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:46 2005
         (290 letters)



>mm_chr7_57984615_57985304
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagtgatgggaggaaagattaaccataactcaagatgcacattcgggacagaacaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagtgatgggaggaaagattaaccataactcaagatgcacattcgggacagaacaccca 260

                                                                       
Query: 61  gaattgggagtttgaagcgacatgaaaatctaatgacactttggggttgtgaggtgtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaattgggagtttgaagcgacatgaaaatctaatgacactttggggttgtgaggtgtgct 320

                                                                       
Query: 121 gtgggtgtaatgacctcttggtatccatcccactgtcagtcaccaagccttctgtttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgggtgtaatgacctcttggtatccatcccactgtcagtcaccaagccttctgtttata 380

                                                                       
Query: 181 atcaaatattgactcctatataagtttagatttgagtaatagttttatacattgaaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaaatattgactcctatataagtttagatttgagtaatagttttatacattgaaaaat 440

                                                             
Query: 241 tgaaatcaaataaatgtttaagcaaatattattctcttatctttctagaa 290
           | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaatcaaataaatgtttaagcaaatattattctcttatctttctagaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)