BAC Information

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BAC

Clone NameMSMg01-266O09
Chromosome7 (Build37)
Map Location 86,738,848 - 86,739,132
singlet/doubletsinglet
Overlap geneRhcg
Upstream geneMrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517
Downstream gene5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266O09.T7 (MSMg01no266_o09.b1)MSMg01-266O09.TJ (MSMg01no266_o09.g1)
ACCAG407764AG407765
length736737
length of high quality
(start - end)
249 (72 - 320)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no266_o09.b1 PHD_FILE: MSMg01no266_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:48 2005CHROMAT_FILE: MSMg01no266_o09.g1 PHD_FILE: MSMg01no266_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTTGCCAAAGAAAACCATGCTGCTTAGTTGTTTGTTAACT
TGAGACAAACGAGAGTTATCTGCGAAGAAGAGGATGTGAGTGAGAGAGTG
CCCCATCAGGGTTCCCTGTGGGCAGGTCTGCGGGGGAGGGGGCATTTTAT
TGGTTAGTGATTAATGTAGGTGAGTCCCAGCTCACTGTAGGTGGTGCCAG
CCCTGTGCGGTTGGTCCTGGGCTCTGTAAGAAAGCAAGCTGAGCAAAGCC
ACGGGGAGCAAGCCAGTGTTTTTTTTTTCTTCCATAGNCTTTGCATCAAT
TCCTGCCTTTTTGNGTCNCTTCCCCCCCCCCCCCCCCTCTTAGATNNNAA
GAAANNANNNANNNNCCCCCCCCTTTTAAAAAATAAAGAAGTTTGGTTTC
TGCGGCCGTAGAAATCTTTTTAGGATAAATATAGTCTTAGGTTTCTGATA
CTCCTGTCTTCTAAGTGTTTTTGTCTTAAGCACTCCTCAATTGATCGCCT
CCTCTATTTCCTAATATATTTGATTTTGCTGTCTCATTGTATGCCCCAGT
CATGTATCTCCCCTATTTCTTTCCTCCCTTTGTTCTTTTTTTCGTCCCCC
CTGCCCTTTTTTTTCTTTTTTCTGCATGCCCTCCCCTGTGTTTTTCCTTT
ACACAAATACTTGCCCTCTTTTTGTCCTTTCTGCTT
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTAAGTAGCTGAGGATGTCCTTGAAC
TACTGACCATCCTGTCTTAGCTCCCAAGTGTGGAATTATAGGTGTGTACC
ACCAAACCCAGTTTATAAAATGCTGGTCTTCAAACTCAGGCCTTTGTGCA
TGCTAGGCAAGCAATCTGAGCTACATCCCAGGCCCCTTTCTTTCTTTTTA
AAAGATGAAGAAATTAATGGACAGGATCTTCAAGCCACACGGCTACCAAG
TGAGGGGAAGGGGGCCTTTCAAGGTCATTAACATTGATCATATCAGTGTT
TGATGCCCTTGGTGTTCACACCCCGCCCCAGCTGGGTCTAGGGTAAAAAG
CAGGAGAGAAGGCCCCCGGAAGAAACAAAGCCAGACTGCGGCCACTGATC
AGACAAGGTTCCGGGAGGCTGCACAGCTGTGGTGGGGACATACCAGCTGC
TCCCCCTCTCTCTTGCAGGCCCCACAGATTGCCCCCAAGCTCTGGAGAGA
GCTGGGGCTGACATATCTGGGAACTCAGGGACAGGGCAGCGGAAAGGCCC
ACTGGCCTGACTCCAGCACCTCTACACCCGCTTCATCCCAGGGGGCTCAC
CGGGCTGAGAATGGAGGAGATTCGGACAAAGTGAGCTCCAAGCCAGGGTC
AGCTGCAGAAGGTCTGTCCCTGCCTGCGGTCATGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_o09.g1 MSMg01no266_o09.g1 CHROMAT_FILE:
MSMg01no266_o09.g1 PHD_FILE: MSMg01no266_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:48 2005
         (285 letters)



>mm_chr7_86738485_86739169
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaagtagctgaggatgtccttgaactactgaccatcctgtcttagctcccaagtgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 actaagtagctgaggatgtccttgaactactgaccatcctgtcttagctcccaagtgtgg 589

                                                                       
Query: 61  aattataggtgtgtaccaccaaacccagtttataaaatgctggtcttcaaactcaggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aattataggtgtgtaccaccaaacccagtttataaaatgctggtcttcaaactcaggcct 529

                                                                       
Query: 121 ttgtgcatgctaggcaagcaatctgagctacatcccaggcccctttctttctttttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ttgtgcatgctaggcaagcaatctgagctacatcccaggcccctttctttctttttaaaa 469

                                                                       
Query: 181 gatgaagaaattaatggacaggatcttcaagccacacggctaccaagtgaggggaagggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gatgaagaaattaatggacaggatcttcaagccacacggctaccaagtgaggggaagggg 409

                                                        
Query: 241 gcctttcaaggtcattaacattgatcatatcagtgtttgatgccc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gcctttcaaggtcattaacattgatcatatcagtgtttgatgccc 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)