BAC Information

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BAC

Clone NameMSMg01-267D14
Chromosome7 (Build37)
Map Location 131,176,236 - 131,176,550
singlet/doubletsinglet
Overlap geneEG628779
Upstream geneTnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267D14.T7 (MSMg01no267_d14.b1)MSMg01-267D14.TJ (MSMg01no267_d14.g1)
ACCAG408005AG408006
length758731
length of high quality
(start - end)
321 (46 - 366)293 (439 - 731)
definitionCHROMAT_FILE: MSMg01no267_d14.b1 PHD_FILE: MSMg01no267_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:14 2005CHROMAT_FILE: MSMg01no267_d14.g1 PHD_FILE: MSMg01no267_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCTGCTTCTCTTTCACAGGTGCAATTGTCTGAACATTCAAATGC
ACACACCTGCTCACCAGCTGACATGTTAAGCTGACAGCACCCTTTCAGAC
TCGGGAATAGCGCGCTAGCAAAATCCTTGACTCTTTCTATTCCCAGAGTG
GCTGAGACGTTCAGACAAGATTCCAGCTATGAAATTTCAGACATGGCTAG
TTCTTTCACTGAGGGACAGCCATGCACGTGCTCTGCAGGGGTGTTAGGAG
TGTCCACAAGAGCTTTCTAACACTTTCTGGAAGTCGAGAGCAGTGGCTAA
ATATACAAACACTGTNATCTGGGACCACCCACCCCCCGATCCAGATCTGT
CACTCATTTCTCTGTACTACCGCCAGCTCCCTCCTCTATAGGAGGAAAAA
AGACAACCTCCACCTAATAAGAGTTGTGGGGATTGGTGAGGAAGAGATAC
CCAGGCTCTGCACACCGCCAGTGAGTGTGGCTGTAGGTGCTTCATCTGAT
GTATTAATACTTTGAGTTCTCAGGCTGGGAGCCCTCAGCTGCTACTTGCT
ATACAGAAAGACAAGCCATGAGGCTTGACCTGAAGACAATAGCATAGCTC
AGTCCCATGCTGAGTGCTGTCCACATCTGACGGTGCTGAACACACTTGTC
TTCCTGCCTTCAGCTCAGTACCCGAAAACATGTACTCGTCATGCTCCTAG
CCCCCATT
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAACAAACCTGGACCCCCAAGAT
CTCCCAGACACTGAACCGTTTACCACGCAGCTACACTCACTAGCTGGTCC
AAGGGCCCCTGACATAAATACAGTAGAGGACTGACTGGTCTAGCCTCAAT
GAGAGAAGAGGCACAAACCTTTGGAGGCTTGAGGCCCCAGGGGATGGGGA
GGCCTGGCAGGGTGTGGGGTGTGTGGAGGTGTGGGGACATCCTCTTGAAG
ACAGGGGAAGAGGAATGGGATGAGGAACTGTCAGAGGGCAAAATAGGAGG
GGTATAATGACTGTTTTATTTAAAACCCCCCCCATAATAAAAAACAAAGA
AAGATAGCTATAAAATTTATTTACAAATGTACAAAGATTCTTTTTATAAA
CATGTATGTTTATTAGTTCTTGAAATTTTATTACCTTTTTGGTAATTTTC
ATCCCCTTCTTTCAACTTCTCCAATGTTCACTTCCCTTCTATAGCAAGCA
TTCTATAGTTTCTTACTCTCCACAGTTCAGCCACTTGTGCATCCTTGAGT
TATTCACTATCTACTGCAATTAGCAATTTTTTGATGAGGGTTGATATATG
TACTAATCTATGGGTATAATGATAAGTTATTGGAAGTCAGTTCACACAGG
GTTTATGGCTGGAGTAATATTGATGCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_d14.b1 MSMg01no267_d14.b1 CHROMAT_FILE:
MSMg01no267_d14.b1 PHD_FILE: MSMg01no267_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:14 2005
         (321 letters)



>mm_chr7_131176032_131176752
          Length = 721

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgctgcttctctttcacaggtgcaattgtctgaacattcaaatgcacacacctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattctgctgcttctctttcacaggtgcaattgtctgaacattcaaatgcacacacctg 460

                                                                       
Query: 65  ctcaccagctgacatgttaagctgacagcaccctttcagactcgggaatagcgcgctagc 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctcaccaactgacatgttaagctgacagcaccctttcagactcgggaatagcgcgctagc 400

                                                                       
Query: 125 aaaatccttgactctttctattcccagagtggctgagacgttcagacaagattccagcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aaaatccttgactctttctattcccagagtggctgagacgttcagacaagattccagcta 340

                                                                       
Query: 185 tgaaatttcagacatggctagttctttcactgagggacagccatgcacgtgctctgcagg 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgaaatttcagacagggctagttctttcactgagggacagccatgcacgtgctctgcagg 280

                                                                       
Query: 245 ggtgttaggagtgtccacaagagctttctaacactttctggaagtcgagagcagtggcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ggtgttaggagtgtccacaagagctttctaacactttctggaagtcgagagcagtggcta 220

                          
Query: 305 aatatacaaacactg 319
           |||||||||||||||
Sbjct: 219 aatatacaaacactg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)