BAC Information

Click to search

BAC

Clone NameMSMg01-269E21
Chromosome7 (Build37)
Map Location 112,747,249 - 112,747,564
singlet/doubletsinglet
Overlap geneHpxn
Upstream geneOlfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1
Downstream geneTrim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269E21.T7 (MSMg01no269_e21.b1)MSMg01-269E21.TJ (MSMg01no269_e21.g1)
ACCAG409458AG409459
length739732
length of high quality
(start - end)		320 (43 - 362)290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no269_e21.b1 PHD_FILE: MSMg01no269_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:44 2005CHROMAT_FILE: MSMg01no269_e21.g1 PHD_FILE: MSMg01no269_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGTTGTGTTACGGCCCATAGAAAGATGGTACCAAGGTAAGGGAAAGA
AAGCATGAGAGAGCAAGTAGGACCCAAACCTGCTTTTATAGTGACCCATT
CTTATGATAGCTAACCTACTCCCATTATCATTTTGAACCACTAATGATAA
GCCATTTGTGAGGCAGTACTCTGATGAACTAACAAGGTCTTATTAGGCCC
TGCTTCCCAGCACTGTTTGTTGCATGGGGACAAACTTTTCTACATATAAC
CTTGAAGGACACATTCAAACTATGATCGAATCCTTGCTGATCGGTATAAA
GTTTCCTCCCCTGTTTCTTACTCTCCTCACAGAGCAGTCTTCCCACCCAC
TCCATGTGTGTGCGCGCGTGTGCGTGCAAGAGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGANANANANANANNNNNNNNNNNNNNANNNNNNNNNNNN
NCNNNNNNNNNNNTNANNNANNCNTTTATNTNTTTTTTTTCTNATTTTTT
TTCTTTTTTTCCATCTCTCTAATATTCTATAAATTTTATCTTCTTTTTAA
ATCTATTTTTCTATTTATTATTTATACATCTATCTTCATTTTTTTTAACT
TTTCACACCTTCTTTTTTTCTTTCTACACACCTATTCTACATTACTTATT
CTTATCTACCTCTCTTCTTTCTTCTTCATTTTTCTTTTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTCTGTAGACCACGCTTGGCCTTGAACTCG
TAAAAATACACCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTG
CCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCC
TCTGCCTCTGCCTCTGCCTTTGCCTGTCTCCCAAGTGAGTGGAGGCATTA
AACCATACCTGGCAAATCATTTATAAGAGTTGCCCTAGTGATGGAGTCTC
TTCCCAGCCTTAGAACAGTGGCTAACACAGTATGACAGTTAAGGTGTCAA
AGTGGGATCTTTTATGCCCCCACCCCCCCTAAGGATGACTAAAGCTCAAG
GAAGTTCATGACAATTACTAGATAGCAAAATAATTCTGTGGGTGACCAAG
ATCAGCCAGAACATGTGTGGAAGATGGAAATGAAAGAGAGAGATCTAAGA
TTTCTAGGAAACACTAACCTAGAAGGAATGTGCGAAGACTCTTATAAAAG
AGACTAAGAAATAAACAGAACACCAGGAAATGGTGACATTACAAAAGCTA
TGGACAAAAACATTTTGGAAACATTTCCTAGGGATATAGATATTTCTTTC
AAGAAATTCCAAAAATGTAAATCTGACACTAACCCATAGCTATATAAAAC
AGTTTACAGGTTCCCCATTGTCTTTGATTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_e21.b1 MSMg01no269_e21.b1 CHROMAT_FILE:
MSMg01no269_e21.b1 PHD_FILE: MSMg01no269_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:44 2005
         (320 letters)



>mm_chr7_112747206_112747925
          Length = 720

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgttgtgttacggcccatagaaagatggtaccaaggtaagggaaagaaagcat 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaattcatgttgtgtaatggcccatagaaagatggtaccaaggtaagggaaagaaagcat 300

                                                                       
Query: 65  gagagagcaagtaggacccaaacctgcttttatagtgacccattcttatgatagctaacc 124
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gagagagcaagaaggatccaaacctgcttttatagtgacccattcttatgatagctaacc 240

                                                                       
Query: 125 tactcccattatcattttgaaccactaatgataagccatttgtgaggcagtactctgatg 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tactcccattatcatattgaaccactaatgataagccatttgtgaggcagtactctgatg 180

                                                                       
Query: 185 aactaacaaggtcttattaggccctgcttcccagcactgtttgttgcatggggacaaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aactaacaaggtcttattaggccctgcttcccagcactgtttgttgcatggggacaaact 120

                                                                       
Query: 245 tttctacatataaccttgaaggacacattcaaactatgatcgaatccttgctgatcggta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tttctacatataaccttgaaggacacattcaaactatgatcgaatccttgctgatcggta 60

                           
Query: 305 taaagtttcctcccct 320
           ||||||||||||||||
Sbjct: 59  taaagtttcctcccct 44


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |