BAC Information

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BAC

Clone NameMSMg01-269P24
Chromosome7 (Build37)
Map Location 78,701,383 - 78,849,677
singlet/doubletdoublet
Overlap geneLOC665535
Upstream genenone
Downstream geneMctp2, LOC100042873, LOC100042880, LOC233391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269P24.T7 (MSMg01no269_p24.b1)MSMg01-269P24.TJ (MSMg01no269_p24.g1)
ACCAG409961AG409962
length724726
length of high quality
(start - end)		197 (128 - 324)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no269_p24.b1 PHD_FILE: MSMg01no269_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:34 2005CHROMAT_FILE: MSMg01no269_p24.g1 PHD_FILE: MSMg01no269_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,701,383 - 78,701,576)(78,849,390 - 78,849,677)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGTGCCGCGGA
ANTCNGAACAATTTGCGAAAAAGGGAGNAGGNAAAGGANTNAAGNNTGGG
AANNAAAGGAANTNNATTGTTAGACGGACTTGGGAGTGAAGGNAAGAAAC
TACCACATTAAACAGAAAGGTTCAGAGAGTAAAGGGGATGCCTGGGAGGG
CAGGAGAGACTGCTCAGAAGTGAAGCCAAGAGGCCCTGCCAATGCTCTCC
AGCAAGTGTTCTTGGCTTCTGTAGGGCTGTAGCTCCCCTGTCACTCAGAA
CAGCCTTGTCCCCATCTGCTGGTCTGTTTTTTGNCTGAGGCANCNCNNGG
CCNCANGGCAACCTTTTTGTGTTCCAAAACAAAACACCCANAGGAANGAG
NANAGGAAAGGGNAGGGNGNGNCCAAAAANNNAAAANNNAAGAGGGCGGG
GGGGGGGNGGGGAANCNNNGGGNNCNGCCNNNAGNNNNNCAGCCANCANC
ACAAGAAGGCCCCCAAAGAACANNGCCAANNNCAAAACCCCAACANGGNN
GAGGGGAAACCGCANGGGGGAAAAACCACGNGCCCGAAAACCAGAACACG
GGACACGGCAGACCGGGGGGGGAGCCCCCACACAAGGACCCCAAACACAG
GCACCAGACACAGACCGTTTTTCTTGTTGCCACGAAAGAAGGAAGACACC
AGAATTAGAATAACGAACAAGTCT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGATGGTTGTTGATCCAGTCTTCCTTT
GTTGTTAAGGCAGCCTGTGTCTCTTAGCACCTGAAGATGACCCTAGCTCC
CTTGGCCTGAGGTCAGTAAGGACCAAATTGCTCTCTTGTGGTACTGGATT
TGTAAAGAAACCGGACTGTTTCATGCCAGAATTAGATGGAGCCCTCTGGC
TAACCAGAAGAGGTTCTAAGGACTGGTGATCAAAATTAAATATAGTGAGC
CTTGTGGAACATTGACCAGCTGAGGGCACGGGTAAGGAGGAGACACCAAT
CCTTTTCCTCCGTATTTCAGAATCGCACCGAGAGGTTCCAGTGCTTCTAA
ACATCCTCTAGGAGGGGCTGTGAAGTCATTTATTGGAAAAATACTTACCA
AGTCTTACTGTAGAAGATTCTGAGGAGAATAGAACAAAACAAAAACAAAA
CTGGAAAATTGTCTTAGGTCTCAACCTTATGGTTTATAATCTAGTAGAGA
ATGTCAGAAAAGAGTATTTGATGTCCATATGCAAATAGTGAAGGCGCTGG
CCTACAGGAGACGGTGTGCATGATGGTGCTAAAGGGGCATTGCAGAAGGA
AGGCCACCACATGAGTAGTTTTTCCAAGAGCATCCTAGGCTTGGGAAAGA
TTATTTCAGAGTTGGCTGTGTGGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_p24.b1 MSMg01no269_p24.b1 CHROMAT_FILE:
MSMg01no269_p24.b1 PHD_FILE: MSMg01no269_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:34 2005
         (197 letters)



>mm_chr7_78701183_78701779
          Length = 597

 Score =  339 bits (175), Expect = 1e-97
 Identities = 189/194 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgggagtgaaggnaagaaactaccacattaaacagaaaggttcagagagtaaagggg 60
           |||||||||||| |  |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgggagtgacgacaagaaagtaccacattaaacagaaaggttcagagagtaaagggg 260

                                                                       
Query: 61  atgcctgggagggcaggagagactgctcagaagtgaagccaagaggccctgccaatgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcctgggagggcaggagagactgctcagaagtgaagccaagaggccctgccaatgctc 320

                                                                       
Query: 121 tccagcaagtgttcttggcttctgtagggctgtagctcccctgtcactcagaacagcctt 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagcaagtgctcttggcttctgtagggctgtagctcccctgtcactcagaacagcctt 380

                         
Query: 181 gtccccatctgctg 194
           ||||||||||||||
Sbjct: 381 gtccccatctgctg 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no269_p24.g1 MSMg01no269_p24.g1 CHROMAT_FILE:
MSMg01no269_p24.g1 PHD_FILE: MSMg01no269_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:34 2005
         (290 letters)



>mm_chr7_78849190_78849879
          Length = 690

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggatggttgttgatccagtcttcctttgttgttaaggcagcctgtgtctcttagcacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tggatggttgttgatccagtcttcctttgttgttaaggcagcctgtgtctcttagcacct 429

                                                                       
Query: 61  gaagatgaccctagctcccttggcctgaggtcagtaaggaccaaattgctctcttgtggt 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 428 gaagatgaccctagctcccttggcctgaggtcaataaggaccaaattgctctcttgtggt 369

                                                                       
Query: 121 actggatttgtaaagaaaccggactgtttcatgccagaattagatggagccctctggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 actggatttgtaaagaaaccggactgtttcatgccagaattagatggagccctctggcta 309

                                                                       
Query: 181 accagaagaggttctaaggactggtgatcaaaattaaatatagtgagccttgtggaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 accagaagaggttctaaggactggtgatcaaaattaaatatagtgagccttgtggaacat 249

                                                           
Query: 241 tgaccagctgagggcacgggtaaggaggagacaccaatccttttcctc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgaccagctgagggcacgggtaaggaggagacaccaatccttttcctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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