BAC Information

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BAC

Clone NameMSMg01-270A04
Chromosome7 (Build37)
Map Location 119,170,468 - 119,332,633
singlet/doubletdoublet
Overlap geneUsp47, Dkk3
Upstream geneCtr9, Eif4g2, LOC100043221, LOC100042658, LOC384658, Galntl4, LOC668399, LOC100042678
Downstream geneMical2, Micalcl, Parva, LOC627808, Tead1, 4632411J06Rik, LOC434227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270A04.T7 (MSMg01no270_a04.b1)MSMg01-270A04.TJ (MSMg01no270_a04.g1)
ACCAG409968AG409969
length733720
length of high quality
(start - end)
691 (43 - 733)640 (81 - 720)
definitionCHROMAT_FILE: MSMg01no270_a04.b1 PHD_FILE: MSMg01no270_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:34 2005CHROMAT_FILE: MSMg01no270_a04.g1 PHD_FILE: MSMg01no270_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,170,468 - 119,171,153)(119,332,029 - 119,332,633)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTGACAGCAGAGGTGGTGTTTCTCACTTTTGTTTTTCTATATATATT
ACAAGTCTAGGGGAGTGTTTTTGCTGGAGCATAGATTAGTAAATATTCAT
TTGTATGGTTGTAAGGATGGAAGGAGACTTTGAATTCTAACTGGCTATTC
CTCTGCTTGGAGATTTTCCATAGCATAATTGGCAAGCTGTTTCCATATCC
ATGACTTATCTTGATAACAGCTTTTTCTTCTTAAAATAACAGACCTCTGT
TATTTTAAGGTTTTGCATTGAGATAAATCTAGATCTTTAGTGTCATCTTT
TGATAGTTGTCAATGATCAACATTTCTGTTGGAGCGCTTTTCTTATGGCT
GAAGATAGAGAAAGCAGAGCTCACTCACCCTTTCTGTTCTGGAGTCTGCA
TTCCTCAGCTCTTCAGCTGCTTGGTGCTTGTTCATTTGGACATGTTCCAG
CATTCTAGTACTCCTAAATTATACCCCAAAAAGAGCAAAAGGAGAGGGCG
GTGTTCATTGAGGAGCGTATCACTGTTTTACTCTGCTATGTGACTTAATT
GCAATATTGATTTTGATGTTGAGATTGCTTGCTTTTAGTACCTTCAGTTT
TAATTATTGCCTGGTGGTTGTTTCTTTGTTTCCTTATAAGGGTTTGGGTC
ATAACATATAGGAGTACTCTGCCCTGTAGGAAN
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTGTAGCCCGGGCTAGGA
AGTAACTATGGGAGATGGAGGATGTGGGATGGGTGAGGCCAGCTGCCCCA
GGCCTGCTCTCAAGATAGGGTACTCCCGAGGGTAGGAGACAGTCAGCTTA
TTTACAGTGAACAGCCATAGCCGTGCAGCTAGCTTCAGGGGTGAGTGAAT
GAGATGAGGGGGGTCAAATGCAGGCTGACCCTGGAAGCATGGCCACTCCT
GGAAAAGGTGGACATAGATGGTGGCTGCCTGGCTCAAACACACGTACTGT
GAGTCATGCTACAGCCAACAGCACACACATTCTATCTCCCCACCCCGGCA
GTCCTCTGGGTAAGGCTCACGGTCCCAGAGGCTCAAGGATCAAGCCTTCA
ATGGTACAATGATCCCCTTAGTCCCCTGAGTCAAGTCTCCTTTCTACAGG
AGCAAAAGCTCTGTTCTCAGTGCTGGCCTCCACCTGACCTCTGACCCCTT
TCATGGTTGTAGGACAGAGGGCATCCCTGTGCCTCAGCTTGTACCCATTC
CTGAGTGTCACTGTGAAGTTAGGTCAAGGGGAGTTCTACCAAGCATGTCC
CTATACATTAAAACATCCACCTTGTGAGTAGTTCTCCCGAAAGTATCATT
GAACGGTGCCCCACTTGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_a04.b1 MSMg01no270_a04.b1 CHROMAT_FILE:
MSMg01no270_a04.b1 PHD_FILE: MSMg01no270_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:34 2005
         (691 letters)



>mm_chr7_119170265_119171355
          Length = 1091

 Score = 1303 bits (674), Expect = 0.0
 Identities = 683/686 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttgacagcagaggtggtgtttctcacttttgtttttctatatatattacaag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttgacagcagaggtggtgtttctcacttttgtttttctatatatattacaag 263

                                                                       
Query: 64  tctaggggagtgtttttgctggagcatagattagtaaatattcatttgtatggttgtaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctaggggagtgtttttgctggagcatagattagtaaatattcatttgtatggttgtaag 323

                                                                       
Query: 124 gatggaaggagactttgaattctaactggctattcctctgcttggagattttccatagca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatggaaggagactttgaattctaactggctattcctctgcttggagattttccatagca 383

                                                                       
Query: 184 taattggcaagctgtttccatatccatgacttatcttgataacagctttttcttcttaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taattggcaagctgtttccatatccatgacttatcttgataacagctttttcttcttaaa 443

                                                                       
Query: 244 ataacagacctctgttattttaaggttttgcattgagataaatctagatctttagtgtca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataacagacctctgttattttaaggttttgcattgagataaatctagatctttagtgtca 503

                                                                       
Query: 304 tcttttgatagttgtcaatgatcaacatttctgttggagcgcttttcttatggctgaaga 363
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 tcttttgatagttgtcaatgatcaacatttctgttggagagcttttcttatggctgaaga 563

                                                                       
Query: 364 tagagaaagcagagctcactcaccctttctgttctggagtctgcattcctcagctcttca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tagagaaagcagagctcactcaccctttctgttctggagtctgcattcctcagctcttca 623

                                                                       
Query: 424 gctgcttggtgcttgttcatttggacatgttccagcattctagtactcctaaattatacc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctgcttggtgcttgttcatttggacatgttccagcattctagtactcctaaattatacc 683

                                                                       
Query: 484 ccaaaaagagcaaaaggagagggcggtgttcattgaggagcgtatcactgttttactctg 543
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 684 ccaaaaagagcaaaaggagagggcggtgttcattgaggagcgcatcactgttttactctg 743

                                                                       
Query: 544 ctatgtgacttaattgcaatattgattttgatgttgagattgcttgcttttagtaccttc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctatgtgacttaattgcaatattgattttgatgttgagattgcttgcttttagtaccttc 803

                                                                       
Query: 604 agttttaattattgcctggtggttgtttctttgtttccttataagggtttgggtcataac 663
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 804 agttttaattattgcctggtggttgtttctttgtttccttataagggtttgggtcatagc 863

                                     
Query: 664 atataggagtactctgccctgtagga 689
           ||||||||||||||||||||||||||
Sbjct: 864 atataggagtactctgccctgtagga 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no270_a04.g1 MSMg01no270_a04.g1 CHROMAT_FILE:
MSMg01no270_a04.g1 PHD_FILE: MSMg01no270_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:34 2005
         (640 letters)



>mm_chr7_119332029_119333068
          Length = 1040

 Score = 1017 bits (526), Expect = 0.0
 Identities = 591/628 (94%), Gaps = 27/628 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgtagcccgggctaggaagtaactatgggagatggaggatgtgggatgggtgaggcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 605 acttgtagcccgggctaggaagtaactatgggagatggaggatgtgggattggtgaggcc 546

                                                                       
Query: 61  agctgccccaggcctgctctcaagatagggtactcccgagggtaggagacagtcagctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agctgccccaggcctgctctcaagatagggtactcccgagggtaggagacagtcagctta 486

                                                                       
Query: 121 tttacagtgaacagccatagccgtgcagctagcttcaggggtgagtgaatgagatgaggg 180
           |||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 485 tttacagtgaacagccgtagctgtgcagccagcttcaggggtgagtgaatgagatgaggg 426

                                                                       
Query: 181 gggtcaaatgcaggctgaccctggaagcatggccactcctggaaaaggtggacatagatg 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtgtcaaatgcaggctgaccctggaagcatggccactcctggaaaaggtggacatagatg 366

                                                                       
Query: 241 gtggctgcctggctcaaacacacgtactgtgagtcatgctacagccaacagcacacacat 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 365 gtggctgcctggctcaaacacacgtactgtgagtcatgctatagccaacagcacacacat 306

                                                                       
Query: 301 tctatctccccaccccggcagtcctctgggtaaggctcacggtcccagaggctcaaggat 360
           |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 305 tctatctccccaccccagcagtcctctgggtaaggctcacggtccctgaggctcaaggat 246

                                                                       
Query: 361 caagccttcaatggtacaatgatccccttagtcccctgagtcaagtctcctttctacagg 420
           |||||||||||||||||||||||||||||||||||||||||||||   ||          
Sbjct: 245 caagccttcaatggtacaatgatccccttagtcccctgagtcaag---cc---------- 199

                                                                       
Query: 421 agcaaaagctctgttctcagtgctggcctccacctgacctctgacccctttcatggttgt 480
                     |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 198 ----------ctgttctcagtgctggcctccatctgacctctgacccctttcatggttgt 149

                                                                       
Query: 481 aggacagagggcatccctgtgcctcagcttgtacccattcctgagtgtcactgtgaagtt 540
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 aggacagagggcacccctgtgcctcagcttgtacccattcctgagtgtcactgtgaagtt 89

                                                                       
Query: 541 aggtcaaggggagttctaccaagcatgtccctatacattaaaacatccaccttgtgagta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  aggtcaaggggagttctaccaagcatgtccctatacattaaaacatccaccttgtgagta 29

                                       
Query: 601 gttctccc--g--aaagtatcattgaac 624
           ||||||||  |  |||||||||||||||
Sbjct: 28  gttctccctagataaagtatcattgaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)