BAC Information

Click to search

BAC

Clone NameMSMg01-271J24
Chromosome7 (Build37)
Map Location 69,326,467 - 69,326,760
singlet/doubletsinglet
Overlap genenone
Upstream geneD0Kist2, LOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
Downstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271J24.T7 (MSMg01no271_j24.b1)MSMg01-271J24.TJ (MSMg01no271_j24.g1)
ACCAG411125AG411126
length758750
length of high quality
(start - end)
224 (434 - 657)294 (70 - 363)
definitionCHROMAT_FILE: MSMg01no271_j24.b1 PHD_FILE: MSMg01no271_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:32 2005CHROMAT_FILE: MSMg01no271_j24.g1 PHD_FILE: MSMg01no271_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGTGACTCGGCGGAATTCTCA
GGGACTAACTGAACATGAGGCAGNGGGTCTCAACGTGGATGTGTAGACCC
ATTTTGGGATGAATGCCCCTTTTACAGAATTCACCTGAGAATATTAAAAG
ACACAGATATTTAAATCACAATTCATAACTGTAGCAACATTAAAGTCTAA
AGAATCAATAAAATAATTTTAAGGTTGAGGGGCAAGACTATGTGGTATTT
TATTAAACCATTGCCAAATTAGAAAGGTTAAGAACCACTGACAATACATG
CAGTAGTCACAAATGTTNATTATTAAATTCAGTGAAAATGGTTTATGATT
TCAAAAGATCATTTTTAGCCCCCCCCCCGCCTTAATATGTATGACTTATC
TTACTGTAGTGACTGACAGAAACAGATGAAAATAAGCAGACATTATATAC
TAAGTGAAAATGACAAGTCTAAACAACCTACTCTGAAAAGAAACATACAA
GAAATATTACACAGAATGAACAGATTTTATGTAAATAAATATATATACAT
ATATATATGTACATACATATATATATATACATATATATGTGTATATGCAT
GCTGTATAAATTAGCAAAAAGGGGGAGCAAGAATATAAAAGAGAGTATGA
ATGTGTACACTTAAGGAAGGATATGGAGAGAAAGAAAATGATGCATTTTA
CAAACAAATCATAATATCAAGAATCAAGAAATATAAAAGAAAAAGGATAC
TTTGAAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGCTTGTCTCCATCTGCTTTAAAATGGAG
TGTTTTTATGAGGGTGAGAGTTATACTAATTTCTCTGTGAAAGACACACA
TTCAAACTGCGTTTAGAAAATATATAATGCCAAAAACATGGCTGTCATAA
ACTTTCTGGCAGGATCTGTAACCTCACCAGCCATGAACTACTGACCAAGT
ATACAGTATCCAGGAAGATTTTTCTTCTTTGCCATGATATAAGTCTACTT
ACTCACCATGAATAGTGTGAACAATTGGGTTATGGATTTGAGCCACTAAG
CCTCCAATACCCTGTTAATAACCTCACCCCTCTAGAAATGATGACAATTA
AGGAAAGATGGTAAAATCATAATGTTTAACAACATGTTTTGTAGCAGTGT
TATCTGTAGGGTTTACATCAATATAACATGGTGGTAAGAAATTGCCCAAT
GTAAAGCTGATTGCTATTGGATACTCCATATCACTTCCATATTGCAATTA
ATTCTATAATGCAACTTATATTGAATGTAGTTAAAGCCTTTGACTTATGT
GTGGACTATGTGGGGCATGGGACATAGTCATATCACATTTATTTCCTGCT
CTTGATCCACTACATCCTTGTGGTTCATGATGGAAAAGGACAGGTGCTTA
TCTGTTTCCTACCTTTTCAGTCAAGTATTCATAAAAATAAAATTACATCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_j24.g1 MSMg01no271_j24.g1 CHROMAT_FILE:
MSMg01no271_j24.g1 PHD_FILE: MSMg01no271_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:32 2005
         (294 letters)



>mm_chr7_69326267_69326960
          Length = 694

 Score =  538 bits (278), Expect = e-157
 Identities = 290/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgcttgtctccatctgctttaaaatggagtgtttttatgagggtgagagttatactaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tctgcttgtctccatctgctttaaaatggagtgtttttatgagggtgagagttatactaa 435

                                                                       
Query: 61  tttctctgtgaaagacacacattcaaactgcgtttagaaaatatataatgccaaaaacat 120
           ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 434 tttctctgtgagagacacacattcaaactgtgtttagaaaatatataattccaaaaacat 375

                                                                       
Query: 121 ggctgtcataaactttctggcaggatctgtaacctcaccagccatgaactactgaccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggctgtcataaactttctggcaggatctgtaacctcaccagccatgaactactgaccaag 315

                                                                       
Query: 181 tatacagtatccaggaagatttttcttctttgccatgatataagtctacttactcaccat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tatacagtatccaggaacatttttcttctttgccatgatataagtctacttactcaccat 255

                                                                 
Query: 241 gaatagtgtgaacaattgggttatggatttgagccactaagcctccaataccct 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gaatagtgtgaacaattgggttatggatttgagccactaagcctccaataccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)