BAC Information

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BAC

Clone NameMSMg01-272K18
Chromosome7 (Build37)
Map Location 148,290,533 - 148,290,812
singlet/doubletsinglet
Overlap geneTrp53i5
Upstream geneEchs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr
Downstream genePtdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272K18.T7 (MSMg01no272_k18.b1)MSMg01-272K18.TJ (MSMg01no272_k18.g1)
ACCAG411892AG411893
length741823
length of high quality
(start - end)		315 (45 - 359)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no272_k18.b1 PHD_FILE: MSMg01no272_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:53 2005CHROMAT_FILE: MSMg01no272_k18.g1 PHD_FILE: MSMg01no272_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTATAGATCAGGCTGGCCTCAGACTCAGATCCACCTCCTCTGT
CTCCCGAATACTAGGATTGCAGGCCTGTGACACCACCACCCAGTGCTGCT
TTTTAATTTTATTTATTTTTTTTAAATGGACTTCTTGTTTTTTACTTTCT
TTCAAGATTTTTATTTTATATGTATTGTTTCATCTACATGTATGTCCATG
TGAGGGTGTCAGCCCCTTAGAAATGAAGTTCCAGACAGTTGTGAGCTACC
ATGTGGATCCTGGAAATTGAACCTGAGTTCTCTGGTAGACCAGTCAGTGA
TCTTAACCACATTTTTTTTTTTCCCCACCCCCATTTATTTTTGCATAATT
GTCTAGGTCTGTAGCTGGTCTGGAACTCATGGAAATTCTTCTACTTCAGC
TTCTCAGGGATTACTAAGGTGGGCACATACCTCACAACATTTTTTTTTTT
TTTACTATTTTCTTTTCTTTTACGTGCATGTACCTACTTTGTCTACATGT
GCACACATAGGTGCAATCCCGAGGCATTCAGAAGAGGGGGCTGGAGTAAG
AGACAGTCATGAGCAGCCATATGGGTCCAGGGAACCAATCCCAGGTCCTC
TGCAAGACCAACAAGTGCTCGGAACCTTGCTCAGCCTTTTCAGTATTCTC
ATTTTAATTTTTAANATTCATTTAACTCGCGCGCGTGTGCA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAACTGGGCAATGAGGTCTCAG
GACAGACTGACCTCCTCCAGCTTCCACAGGCCAGCCAGGCGCGTGGATTT
CCCAGGGTGACCATTGATCCTAGGGAGAAAATCAAGGCCTGTGAGGAAGA
TGGACAGCACCCTGATCTTGTGACCATGGGAAGGTAGAGTAGCAGTGTGA
TGGTTTGAATGAGAATGCCTACCCACTCCCAGTAGGCTCATATATTAGAA
TACTGTGTCCTTAGTTGGGGGAATGGTTTGGGAAGGATTAGAAGGCATGG
CTTTGTCCGTTTTTGNGTGGGTTCCCGGGCCCGGGCCCCCGNGGGGTGTT
GGGGTGGGGGGGGNGNGGNGGGCCCGNGAAAAAAAAAAAAAAAAAATTTT
CGGGGGTGGGGGGGTGTTCTCCTCTCCTCTTTTCCTCTCTCCCCTCCTTT
TTTCTTTTCCGTCCTTTTTCTTTCCTCTTTCCCTTTTTTTATCCTCTCCC
TCTTCTTCTTCTTCCCTGTTCCTCTTTTTCGCCCTTTTCTTTTCTTTCTT
CCCCCTTTCCCATTTTTACGCCCTCCCCACTCTTTTTTTCCCTCCTCTCT
CGTTTTTCCTCCGCTTTCCCGTTTTTTTCCTCCCTTTTTCCCCTCTTTCC
TCCCATTTTTCTACCCCACTTCTTTCTTTTTTTTCCATCCATTGTTTAAT
TTTCCGCCTTTTCCCCCCCTTTTTTCTTTCCCATCGTCTTTCTTCCTTCT
ATCGCTCTTTTTTTTTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_k18.g1 MSMg01no272_k18.g1 CHROMAT_FILE:
MSMg01no272_k18.g1 PHD_FILE: MSMg01no272_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:53 2005
         (284 letters)



>mm_chr7_148290333_148291016
          Length = 684

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaactgggcaatgaggtctcaggacagactgacctcctccagcttccacaggccagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaactgggcaatgaggtctcaggacagactgacctcctccagcttccacaggccagcc 260

                                                                       
Query: 61  aggcgcgtggatttcccagggtgaccattgatcctagggagaaaatcaaggcctgtgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcgcgtggatttcccagggtgaccattgatcctagggagaaaatcaaggcctgtgagg 320

                                                                       
Query: 121 aagatggacagcaccctgatcttgtgaccatgggaaggtagagtagcagtgtgatggttt 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatggacagcaccctgatcttgcgaccatgggaaggtagagtagcagtgtgatggttt 380

                                                                       
Query: 181 gaatgagaatgcctacccactcccagtaggctcatatattagaatactgtgtccttagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatgagaatgcctacccactcccagtaggctcatatattagaatactgtgtccttagtt 440

                                                   
Query: 241 gggggaatggtttgggaaggattagaaggcatggctttgt 280
           ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gggggaatggtttgggaaggattagaaggtatggctttgt 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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